Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31170 677 / 0 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 674 / 0 Protein kinase superfamily protein (.1) AT1G62400 302 / 3e-100 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G38470 275 / 1e-86 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT5G58950 273 / 1e-86 Protein kinase superfamily protein (.1) AT2G17700 270 / 5e-85 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 269 / 1e-84 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT3G63260 253 / 1e-80 ATMRK1 Protein kinase superfamily protein (.1.2) AT3G27560 250 / 7e-80 ATN1 Protein kinase superfamily protein (.1) AT5G50180 246 / 2e-78 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G001800 [exp] 795 / 0 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 743 / 0 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 739 / 0 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 300 / 4e-99 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 299 / 5e-99 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 294 / 9e-97 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 294 / 1e-96 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 295 / 3e-95 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.007G085300 [exp] 290 / 5e-93 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020374 [exp] 723 / 0 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10009550 [exp] 509 / 5e-171 AT5G16730 571 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10020018 [exp] 301 / 3e-99 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015541 [exp] 302 / 3e-95 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10011173 [exp] 292 / 1e-94 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10015436 [exp] 291 / 5e-94 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10042122 [exp] 286 / 2e-93 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10025442 [exp] 283 / 4e-91 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10023989 [exp] 280 / 2e-88 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 275 / 1e-87 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G280000.3 pacid=42767300 polypeptide=Potri.006G280000.3.p locus=Potri.006G280000 ID=Potri.006G280000.3.v4.1 annot-version=v4.1 ATGATTGGAAAAATGGTGGAAGGGCCCAAATTTACTGGAATCATAGGAGGAAATACCAACAATGAGAACAACTACTATGATTTCACTCAAGGGTTTTACC AAAAACTTGGTGAAGGCACCAACATGTCTATCGACAGTTTACAAACAAGCAATGCGGGTGGATCTGTCTCAATGTCAGTGGATAATAGTAGTGTGGGATC CAGTGATTCTTTAACCCACATCTTAAGCCATCCAGGTTTAAAACCTGTCAATCACCACAACTACAGTGTCTCGGTGGGACAGAGTGTGTTTCGTCCGGGG AAGGTCACCCATGCACTAAATGATGATGCGTTAGCTCAAGCATTGATGGATCCTAAGTACCCAACTGAGGGGCTGCAGAATTATGATGAGTGGACAATTG ATTTGAGAAAACTCAATATGGGTACAGCCTTTGCCCAAGGTGCTTTTGGAAAGTTATATAGAGGAACATATAATGGGGAGGATGTTGCAATTAAGATATT AGAGAGGCCAGAAAATAGCCCAGAGAAGGCACAATTGATGGAGCAGCAGTTCCAGCAAGAAGTTATGATGCTTGCAAATTTAAAGCACCCCAACATCGTG CGATTTATTGGGGGCTGCCGTAAGCCCATGGTTTGGTGTATTGTGACCGAATATGCAAAGGGAGGGTCAGTTAGGCAGTTTCTAACAAGGAGGCAGAATC GTGCAGTGCCATTGAAATTGGCAGTCAAGCAAGCATTAGATGTTGCAAGGGGAATGGCATATGTTCATGGACTTGGATTTATACATCGCGATTTGAAATC AGATAACCTTCTGATTTCGGCTGATAAATCTATAAAAATCGCTGATTTTGGTGTTGCACGGATTGAGGTGCAGACTGAGGGGATGACACCGGAAACTGGG ACATATCGTTGGATGGCTCCAGAGATGATTCAGCATAGGCCCTATACGCAGAAGGTGGATGTGTATAGTTTTGGGATTGTCCTTTGGGAGCTCATAACAG GTTTGCTCCCCTTCCAGAACATGACAGCAGTGCAGGCTGCATTTGCAGTGGTGAACAAGGGAGTGAGGCCAGTTATCCCAAATGATTGTCTGCCTGTACT GAGTGACATCATGACCCGCTGCTGGGACACCAATCCTGAAGTCCGCCCCCCTTTCACTGAGATTGTCAGGATGCTTGAGAATGCTGAAACTGAGATCATG ACTAGTGTGCGCAAGGCACGTTTCAGGTGTTGCATGACTCAACCCATGACAGTTGACTGA
AA sequence Show only first row Show all	>Potri.006G280000.3 pacid=42767300 polypeptide=Potri.006G280000.3.p locus=Potri.006G280000 ID=Potri.006G280000.3.v4.1 annot-version=v4.1 MIGKMVEGPKFTGIIGGNTNNENNYYDFTQGFYQKLGEGTNMSIDSLQTSNAGGSVSMSVDNSSVGSSDSLTHILSHPGLKPVNHHNYSVSVGQSVFRPG KVTHALNDDALAQALMDPKYPTEGLQNYDEWTIDLRKLNMGTAFAQGAFGKLYRGTYNGEDVAIKILERPENSPEKAQLMEQQFQQEVMMLANLKHPNIV RFIGGCRKPMVWCIVTEYAKGGSVRQFLTRRQNRAVPLKLAVKQALDVARGMAYVHGLGFIHRDLKSDNLLISADKSIKIADFGVARIEVQTEGMTPETG TYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGLLPFQNMTAVQAAFAVVNKGVRPVIPNDCLPVLSDIMTRCWDTNPEVRPPFTEIVRMLENAETEIM TSVRKARFRCCMTQPMTVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31170			Protein kinase superfamily pro...		Potri.006G280000 [exp]	0	1
AT2G24360			Protein kinase superfamily pro...		Potri.018G001800 [exp]	1.00	0.9333
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Potri.011G082000 [exp]	3.00	0.8987
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Potri.009G052900 [exp]	4.35	0.8633	HAP2.5
AT5G01960			RING/U-box superfamily protein...		Potri.006G111800 [exp]	5.47	0.8948
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.011G033000 [exp]	5.74	0.8837
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Potri.012G097100 [exp]	7.07	0.8232
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Potri.002G069500 [exp]	7.34	0.8910
AT1G34750			Protein phosphatase 2C family ...		Potri.002G097200 [exp]	8.94	0.8603
AT1G55000			peptidoglycan-binding LysM dom...		Potri.013G021600 [exp]	9.79	0.8947
AT3G60850			unknown protein		Potri.014G070200 [exp]	10.09	0.8669

Compare expression of checked genes

Potri.006G280000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.