Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31160 1723 / 0 DCAF1 DDB1-CUL4 associated factor 1 (.1) AT2G33340 51 / 6e-06 MAC3B MOS4-associated complex 3B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G280600 [exp] 247 / 8e-70 AT4G20325 318 / 3e-105 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012331 [exp] 2222 / 0 AT4G31160 1778 / 0.0 DDB1-CUL4 associated factor 1 (.1) Lus10006376 [exp] 1595 / 0 AT4G31160 1309 / 0.0 DDB1-CUL4 associated factor 1 (.1) Lus10040495 [exp] 1545 / 0 AT4G31160 1325 / 0.0 DDB1-CUL4 associated factor 1 (.1) Lus10006377 [exp] 620 / 0 AT4G31160 484 / 1e-152 DDB1-CUL4 associated factor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G280200.1 pacid=42770715 polypeptide=Potri.006G280200.1.p locus=Potri.006G280200 ID=Potri.006G280200.1.v4.1 annot-version=v4.1 ATGGAGGGATCAAATTCTTTGGACGATTCTCCATCGAGGCAAGCCCAAGCCCAAACCCAAACGCATAGCGGAGGAGGAGGCGGAGGAGATGCTCCTTCTA ATCCGTCGCAACCGCAACCACAATCGCAGAGAGAAGGAGAGGAAGTAGATGAAACGAAGAAGGAAGAAGAGGAATTAATCGAGAAAGCGCAGAAATGGAT TGATAAAATCACTTCTTCTCCTGATAATCCTAACCCTACTCTTCTCCACGCTCTTTCCTCTCTTCTCGAAACTCAAGAGTCACTGTACATGAAGGAGAAT GGTAACTCTTCTTTCAACAATAGTCGTGCTTCTCATAATATCGGACGGCTTGGGAGTTTAGTTCGGGATAATGATGAATTCTTTGAGTTGATTTCTTCGA GGTTTCTGTCTGAAACTAGATACTCAACCTCCATCCAGGCAGCTGCTGCGAGGCTTCTTATGACCTGTTCTCTAACTTGGATTTATCCTCATGTTTTTGA AGACCCTGTTATGGAGAACATAAAAGCTTGGGTGATGGACGAAGCTACCAGATTTCCCAGTGAAGATCGAAACTGGAAGCATGATATGGAGAGAAAGGAG GGCTCAGATTCTGAAATGTTGAAAACCTATTCTACTGGACTTTTAGCTGTAGGTTTGGCAAGTGGTGGTCAAATAGTTGAAGATGTGTTGACATCTGGAT TATCAGCAAAACTTATGCGCTATCTTCGTATTCGTGTCCTTGGGGAGGCAAGTGCAAGCCAAAAAGATGCTAGTTATTTAACAGAGGGCAAGAATGCATC TTCTGCAACTTGTATAAGAGGTAGAGAAGAAGGTAGGTGCAGGGTGCGGCAGCTTCCAGAGGCAACCCTTGAAAATAATATCAGGGCTGCAGATGAGAGA TCTTTAGTTGATTTAGATGAAAGATCTTTAGAATCTGTTGGAGAAGATAATGATGACATAGATGCTGATGGTGGGGAGAGACGGCATGGTCGAGACCTTC GTGATGTAAAAACAAAGTTTGCAGAACTTGATGAAAGTGGAAGAGATGACTTGTTGAGACGCAGGCCTTCCCGTGGATGGACAAGACACAGAGGGAGGGG GAGGGTTAATGAAACAGCACTCGAGAATGAACAGGTTTCAACATCTCCAGATTCTGGTAGTCGATCAGGACCAGGACGGAGTGCTAGAGATAGGAATTCA AAGAATCTTTTAGATGTGAAGAAAGGACCAGATACAAGAAAGTTCCAGGGAAATATGCATTCAGATGGTTTGGCTGTGGAAAGAGACGATAATGATGATT GCTTTCAGGGTTGCAGGATCGGAACCAAAGACATTTCTGATCTGGTGAAGAAAGCAGTTCAAGCTGCTGAAGCGGAAGCTAGAGGAGCAAATGCACCTGC AGGTGCCATCAAAGCTGCTGGTGACGCTGCTGCTGAAGATGTGAAGAGTGCTGCTTTAGAGGAGTTTAAATCAAGCAACAGTGAAGAAGCTGCAGTTTTG GCTGCTTCCCGAGCTGCAAGTACTGTTATTGATGCTGCCAATGCAATTGAAGTTTCTAGGAACTCTGGTGGTACCAATGATGATTCAATGAATCTTGGTG GTGTGGAACCAGAAGTAAATGAGGATGCTGAAGAATATTTTATTCCTGACCTTGAATCCCTTGCTCAATTGAGGGAAAAATACTGCATCCAGTGCCTTGA GATATTAGGTGAGTACGTTGAAGTTCTTGGGCCTGTTCTGCATGAAAAGGGGGTAGACGTGTGTCTTGCATTATTACAGCGCAGCTATAAACACAAGGGA TCATCTACGGCTGTGACACTCTTACCTGATGTGATGAAACTTATCTGTGCTTTGGCTGCTCATCGGAAATTTGCTGCATTATTTGTGGATCGAAGTGGCA TGCAGAAATTGCTTTCAATCCCAAGGGTTGACGAGACATTCTTTGGTCTTTCTTCATGCTTGTTTACTATAGGTTCTCTACAGGGGATCATGGAACGTGT ATGTGCACTCCCCTCAGATGTTGTTCACCAGGTGGTTGAGTTGGCCATTCAACTCCTTGAATGCCTGCAAGATCAAGCCAGGAAAAATGCGGCCTTATTT TTTGGTGCTGCATTTGTGTTCAGAGCCGTTATTGATGCTTTTGATGCCCAGGATGGTTTGCATAAGTTATTGACTCTTTTAAATGATGCTGCCTCAGTTA GATCTGGTGTTAATTCAGGTGCCTTAAATCTGTCCAACTCAACAGCTCTTCGTAATGATCGTTCCTCAGCGGAAGTACTGACATCATCAGAAAAGCAGAT AGCTTATCACACCTGTGTTGCTTTGCGACAGTATTTCAGAGCTCATCTTCTTTTGCTGGTGGATTCCATTCGTCCCAATAAAAACAATCGAAATGTGGCT AGAAATGTTCCAAGTGTTAGGGCTGCATATAAGCCACTCGACATTAGTAATGAGGCGATGGATGCAGTGTTTCTGCAGTTGCAAAAGGATCGAAAGCTGG GTTCTGCATTTGTTAGAACCCGTTTTCCTGCAGTAGACAAGTTCTTGGGCTTTAATGGGCATGTTACCATGCTGGAATTGTGTCAGGCCCCTCCTATTGT TGAGCGATATTTGCATGACTTACTTCAGTATGCATTTGGTGTTCTGCATATCGTTACACTGGTAAATGACAGCCGCAAGATGATTGTAAATGCCACATTA AGCAATAATCGTGTTGGTATTGCCATAATCTTAGACGCAGCAAACATTTCCAGTAATTATGTGGACCCTGAGATCATACAGCCAGCATTAAATGTGCTAA TCAATCTTGTTTGCCCGCCTCCTTCAATAAGCAATAAACCACCTCTAATTGCACCAGGCCAGCAATCTGTTTCTGGTCAATCCTCAAACCCTGTTCAGAT GCCTGGCCAGACTGAGCAGAGGAATGGGGAATCGAGTGCTGTTGATCGAAGCATTGCAGTAGGTTCTGCTTCTCGATCTGCCAGTAGCACTTCACAAACA CCTGTTCCTACAGCAGCTTCAGGATTGGTTGGAGATCGGAGAATATATTTAGGAACTGGTGCAGGTTGTGCTGGCCTTGCTGCTCAAATGGAACAAGTAT ATCGTCAAGCAAGGGATGCAGTGCGTGCTAACAATGGTATAAAGGTTCTTCTCCATCTCCTCCAACCACGTGTTTATTCACCTCCTGCTGCTCTTGACTG TATCCGAGCTCTTGCATGCCGAGTTCTGCTTGGTTTAGCCAGAGATGATACAATTGCCCACATATTGACCAAACTTCAGGTTGGGAAAAAGTTGTCAGAG CTAATTCGTGATTTAGGCAGCCATACACCTGGAACAGAACAAGGCAGGTGGCAAGCTGAACTTGCCCAGATGGCAATTGAGCTAATTGCGATTGTAACAA ATTCAGGACGTGCTAGTACATTAGCAGCAACTGATGCAGCTACCCCTGCTTTGAAGCGCATAGAAAGAGCTGCAATAGCAGCTGCCACTCCTATCACGTA TCATTCCAGGGAACTTTTGCTCCTTATACATGAACACCTCCAGGCATCTGGTTTGGCTTCTGCAGCCGCTATGCTGCTGAAAGAGGCACAGTTGACACCT CTACCATCACTTGCAGCTGCATCATCTCTTTCACACCAAGCTTCCACACAAGAAACCCCTTCAATACAAATCCATTGGCCCTCTGGTCGAACCCCTTGTG GATTTCTGTATGACAAACTAAAAGCAACTGGATGCAGTGACAATTCCAGCTTGAAATGTGAGGCAACAGTGTCTTCAAAGAAGAAGTCACTTGTTTTCTC ACCAACTTTTGGTTCGCAGTCCCGAAATCAGTCACAATTCATAGATTCTGAACAACTGCCATTAAAGAAGGTCTTGAGTAGTTTAAAACAATCTACTGCA TCTCCAAACCCTTTAGAAGCCCCGCCAGAATCCTTACAGAAAAGCAATCCTGAGACAGAGTCCATTTGTAAGACTCCAATTTTGTTGCCAATGAAACGAA AACTATCAGACCTTAAGGATTTTGGGTTGGCATCATCTGGGAAGCGAATCAACACTGGTGAGCACGGGCTTAGATCTCCAGGTTGTCTGACACCCAATAC CGCACGTAAGATAGGTTCACTTAGTGATGCTGTTGGATTTTCTACACCTGCTTCAGGTTTGAGGGATATACATGGTCGATCAACACCGAGCACTTTGGCA GATTATGCTGATGACAACCAATATGGCAGCTACATGCAATCTGGGCCTCTAAATGATAACCAGTCCAGCAACTCAGAGCGGTTAACTCTAGACTCTCTTG TTGTTCAATATTTGAAGCACCAGCATCGCCAGTGCCCAGCTCCTATCACCACTCTTCCACCACTCTCTCTTTTACACCCTCATGTTTGTCCTGAACCAAA AAGGAGCCTGGATGCCCCATCAAATGTAACTGCTAGACTTGGCACACGTGAGTTCAGAAGTATATATGGCGGGGTTCATGGAAATCGCAGGGATCGACAA TTTGTATACAGCAGATTCAGGCCATGGAGAACTTGCAGGGATGATGCTGGTGCCCTGTTGACGTGCATTACTTTTCTTGGTGATTCCTCTCACATTGCAG TTGGCAGTCATGCTGGAGAGCTTAAGATTTTCGACTCTAATAGCAACAATGTGCTAGAGAGCTGCACAAGCCACCAGTCTCCTTTAACACTTGTTCAGTC ATATGTTTGTGGTGAAACCCAACTGGTGCTCTCTTCAAGTTCCCAGGATGTGCGTTTATGGGATGCCTCTTCAATCTCAGGTGGGCCAATTCATTCACTC GACGGCTGCAAGGCTGCTACTTTTAGCAACTCTGGTAATGTTTTTGCGGCCCTAACAACAGAGCAGGCCCGGAGAGAGATTATGCTTTATGATGTACAGA CCTGTCATGTGGAATCAACCCTTTCAGATACAGTTTCAAGTTCTACAGGTCGGGGACATGTTTATTCCCTCGTACACTTTAGTCCTTCAGATACTATGCT GCTTTGGAATGGGGTCTTATGGGATAGGCGGCAATCTGGTCCTGTCCATCGTTTTGACCAGTTTACAGATTATGGTGGCGGTGGCTTTCATCCTGCTGGG AATGAGGTGATTATAAACTCTGAGGTCTGGGATCTCCGGAAATTCAGGCTCTTTCGAAGTGTACCTTCATTAGACCAAACAGTAATAACATTTAATGCTC GTGGGGATGTTATTTATGCAATCCTGAGGAGAAATCTTGATGATGTAATGTCAGCAGTTCATACCCGTCGTGTGAAGCATCCCTTATTTGCTGCTTTCCG CACGGTAGATTCCATCAATTATTCTGAAATTGCGACCACACCAGTAGACCGTTGTGTCCTTGATTTTGCAACAGAGGCAACTGATTCATTTGCTGGGCTG ATTACAATGGATGACCAAGAAGAGATGTTTTCATCAGCCAGAGTCTATGAGATTGGTCGAAGAAGGCCAACTGATGACGACTCTGATCCTGATGATGCAG AGAGTGAGGAAGATGAGGATGATGATGATGAAGATGATGGTGATGTGGATCCCATACTTGGTCCAGGCCTGGATGGGGATGGTGATAGTGACGCTGATGA TATGAGCAATGACGATGACGACGATGATAGTGTGAGTGACCTTGATGATGATGACGATGACGGGGACTTTATGATGGATGATGTAGACTTTGGTGGAGGA GCTGGGATCTTGGAGATTGTGACCGATGGAGATGAGGATGATGATGATAGTCAGTTGCTTGAATCTTACAGCAGCGGCGACGACGACGATTTTGTAGGCA ATGGTTTCTATTGA
AA sequence Show only first row Show all	>Potri.006G280200.1 pacid=42770715 polypeptide=Potri.006G280200.1.p locus=Potri.006G280200 ID=Potri.006G280200.1.v4.1 annot-version=v4.1 MEGSNSLDDSPSRQAQAQTQTHSGGGGGGDAPSNPSQPQPQSQREGEEVDETKKEEEELIEKAQKWIDKITSSPDNPNPTLLHALSSLLETQESLYMKEN GNSSFNNSRASHNIGRLGSLVRDNDEFFELISSRFLSETRYSTSIQAAAARLLMTCSLTWIYPHVFEDPVMENIKAWVMDEATRFPSEDRNWKHDMERKE GSDSEMLKTYSTGLLAVGLASGGQIVEDVLTSGLSAKLMRYLRIRVLGEASASQKDASYLTEGKNASSATCIRGREEGRCRVRQLPEATLENNIRAADER SLVDLDERSLESVGEDNDDIDADGGERRHGRDLRDVKTKFAELDESGRDDLLRRRPSRGWTRHRGRGRVNETALENEQVSTSPDSGSRSGPGRSARDRNS KNLLDVKKGPDTRKFQGNMHSDGLAVERDDNDDCFQGCRIGTKDISDLVKKAVQAAEAEARGANAPAGAIKAAGDAAAEDVKSAALEEFKSSNSEEAAVL AASRAASTVIDAANAIEVSRNSGGTNDDSMNLGGVEPEVNEDAEEYFIPDLESLAQLREKYCIQCLEILGEYVEVLGPVLHEKGVDVCLALLQRSYKHKG SSTAVTLLPDVMKLICALAAHRKFAALFVDRSGMQKLLSIPRVDETFFGLSSCLFTIGSLQGIMERVCALPSDVVHQVVELAIQLLECLQDQARKNAALF FGAAFVFRAVIDAFDAQDGLHKLLTLLNDAASVRSGVNSGALNLSNSTALRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKNNRNVA RNVPSVRAAYKPLDISNEAMDAVFLQLQKDRKLGSAFVRTRFPAVDKFLGFNGHVTMLELCQAPPIVERYLHDLLQYAFGVLHIVTLVNDSRKMIVNATL SNNRVGIAIILDAANISSNYVDPEIIQPALNVLINLVCPPPSISNKPPLIAPGQQSVSGQSSNPVQMPGQTEQRNGESSAVDRSIAVGSASRSASSTSQT PVPTAASGLVGDRRIYLGTGAGCAGLAAQMEQVYRQARDAVRANNGIKVLLHLLQPRVYSPPAALDCIRALACRVLLGLARDDTIAHILTKLQVGKKLSE LIRDLGSHTPGTEQGRWQAELAQMAIELIAIVTNSGRASTLAATDAATPALKRIERAAIAAATPITYHSRELLLLIHEHLQASGLASAAAMLLKEAQLTP LPSLAAASSLSHQASTQETPSIQIHWPSGRTPCGFLYDKLKATGCSDNSSLKCEATVSSKKKSLVFSPTFGSQSRNQSQFIDSEQLPLKKVLSSLKQSTA SPNPLEAPPESLQKSNPETESICKTPILLPMKRKLSDLKDFGLASSGKRINTGEHGLRSPGCLTPNTARKIGSLSDAVGFSTPASGLRDIHGRSTPSTLA DYADDNQYGSYMQSGPLNDNQSSNSERLTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFRSIYGGVHGNRRDRQ FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHAGELKIFDSNSNNVLESCTSHQSPLTLVQSYVCGETQLVLSSSSQDVRLWDASSISGGPIHSL DGCKAATFSNSGNVFAALTTEQARREIMLYDVQTCHVESTLSDTVSSSTGRGHVYSLVHFSPSDTMLLWNGVLWDRRQSGPVHRFDQFTDYGGGGFHPAG NEVIINSEVWDLRKFRLFRSVPSLDQTVITFNARGDVIYAILRRNLDDVMSAVHTRRVKHPLFAAFRTVDSINYSEIATTPVDRCVLDFATEATDSFAGL ITMDDQEEMFSSARVYEIGRRRPTDDDSDPDDAESEEDEDDDDEDDGDVDPILGPGLDGDGDSDADDMSNDDDDDDSVSDLDDDDDDGDFMMDDVDFGGG AGILEIVTDGDEDDDDSQLLESYSSGDDDDFVGNGFY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Potri.006G280200 [exp]	0	1
AT2G36480			ENTH/VHS family protein (.1.2....		Potri.006G115600 [exp]	1.00	0.9347
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	2.44	0.9311
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	3.00	0.9124
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Potri.017G042500 [exp]	3.87	0.8886
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	5.00	0.9061
AT1G05910			cell division cycle protein 48...		Potri.007G127900 [exp]	6.00	0.8903
AT5G22450			unknown protein		Potri.010G238400 [exp]	6.32	0.9080
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Potri.004G228700 [exp]	6.92	0.8948
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	9.16	0.8955
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Potri.004G111500 [exp]	9.79	0.8878

Compare expression of checked genes

Potri.006G280200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.