Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31140 351 / 4e-120 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 335 / 8e-114 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 293 / 3e-97 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 281 / 1e-92 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 262 / 3e-85 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 261 / 7e-85 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 256 / 4e-83 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 244 / 2e-78 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 243 / 1e-77 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 239 / 1e-76 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G280700 [exp] 463 / 7e-164 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 413 / 3e-144 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 345 / 6e-118 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 337 / 9e-115 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G216700 [exp] 310 / 5e-104 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 278 / 1e-91 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.013G059700 [exp] 278 / 1e-91 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G078900 [exp] 272 / 3e-89 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.016G002800 [exp] 272 / 4e-89 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024535 [exp] 350 / 2e-119 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 334 / 1e-113 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 334 / 1e-113 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 303 / 6e-101 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 303 / 7e-101 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039095 [exp] 273 / 3e-89 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031098 [exp] 272 / 5e-89 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10006811 [exp] 264 / 1e-85 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002633 [exp] 258 / 8e-84 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 253 / 9e-82 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.006G280400.2 pacid=42770597 polypeptide=Potri.006G280400.2.p locus=Potri.006G280400 ID=Potri.006G280400.2.v4.1 annot-version=v4.1 ATGCATCCTTTGGCGCCTTCCACGGTGCTTAACATGCTCAGGGACAACGGTTTTCAGAAGGTCAAGCTATTTGATGCTGATTCAGCAACTCTAAATGCTC TCGCTAATTCTGGGATTCAAATCATGGTGGGTATTCCCAATGATATGCTTTATAATCTGGCCAATAGTGAGCAAGCTGCTGACACCTGGGTGGCCAAGAA TGTCTCTTCTCATATCTCTTCTGGTGGTGCAGACATCAGGTACGTTGCAGTTGGAAATGAGCCATTCTTGTCATCCTACAATGGAAGCTTTCTGGGAACA ACTCTTCCTGCTCTTCGGAATATCCAATCAGCTTTAACAAAAGCCGGACTAAGCACTCGGGTGAAAGTCACCGTTCCCCTCAATGCTGATGTGTATGAGA GTCCAGCAAATCTTCCATCCGATGGTGACTTCCGTTCAGACATCCATGATCTCATGCTATCGATTGTCAAGTTCTTGAGCGACAATGGGGCTCCATTCAC TGTCAATATCTATCCATTTATAAGCCTTTGCAGTGATCCTAATTCCCCCCTAGGCTTTGCATTCTTTGGCAACAAGTCATTTCCCTTGAACGATGGCGGG ACAATTTACGACAACGTGTTTGATGCGAACCATGACACCCTTATACGGGCTTTGCAGAAAAATGGTTATGGAAGCTTGCCCGTTGTCATTGGGGAAATTG GGTGGCCTACCAACGAACACAAAACTCGCCCAGTCGTTACTAGTGTCTTTGCGTGA
AA sequence Show only first row Show all	>Potri.006G280400.2 pacid=42770597 polypeptide=Potri.006G280400.2.p locus=Potri.006G280400 ID=Potri.006G280400.2.v4.1 annot-version=v4.1 MHPLAPSTVLNMLRDNGFQKVKLFDADSATLNALANSGIQIMVGIPNDMLYNLANSEQAADTWVAKNVSSHISSGGADIRYVAVGNEPFLSSYNGSFLGT TLPALRNIQSALTKAGLSTRVKVTVPLNADVYESPANLPSDGDFRSDIHDLMLSIVKFLSDNGAPFTVNIYPFISLCSDPNSPLGFAFFGNKSFPLNDGG TIYDNVFDANHDTLIRALQKNGYGSLPVVIGEIGWPTNEHKTRPVVTSVFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31140			O-Glycosyl hydrolases family 1...		Potri.006G280400 [exp]	0	1
AT5G16040			Regulator of chromosome conden...		Potri.004G101800 [exp]	13.78	0.6555
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G255532 [exp]	48.57	0.6204
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.002G123300 [exp]	107.34	0.5459
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	108.16	0.5866
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Potri.018G071200 [exp]	117.77	0.5818
AT5G44450			methyltransferases (.1)		Potri.011G157500 [exp]	253.71	0.5291
					Potri.001G351101 [exp]	256.87	0.5259

Compare expression of checked genes

Potri.006G280400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.