Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20325 320 / 4e-106 unknown protein AT4G31160 75 / 9e-14 DCAF1 DDB1-CUL4 associated factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G281101 [exp] 308 / 3e-102 AT4G20325 202 / 6e-65 unknown protein Potri.006G280200 [exp] 226 / 2e-63 AT4G31160 1723 / 0.0 DDB1-CUL4 associated factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012331 [exp] 96 / 3e-20 AT4G31160 1778 / 0.0 DDB1-CUL4 associated factor 1 (.1) Lus10006377 [exp] 88 / 7e-18 AT4G31160 484 / 1e-152 DDB1-CUL4 associated factor 1 (.1) Lus10040495 [exp] 55 / 2e-07 AT4G31160 1325 / 0.0 DDB1-CUL4 associated factor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G280600.4 pacid=42770040 polypeptide=Potri.006G280600.4.p locus=Potri.006G280600 ID=Potri.006G280600.4.v4.1 annot-version=v4.1 ATGATGGAGGGATCAAATTCTTTGGACGATTCTCCATCGAGGCAAGCCCAAGCCCAAACCCGAACTCATAGCGGAGGAGGAGGCGGAGGAGATGCTCCTT CTAATCCGTCGCAACCGCAACCACAATTACAATCACAATCGCAGAGAGAAGGAGAGGAAGTAGATGAAACGAAGAAGGAAGAAGCGGAATTAATTGAGAA AGCGCAGAAACGGATTGATAAAATCACTTCTTCTCCTGATAATCCTAACCCTACTCTTCTCCACGCTCTTTCCTCTCTTCTCGAAACTCAAGAGTCACTG GCGCGGCAGCTTCCAGAGGCAACCCTTGAAAATAATATCAGGGCTGCAGATGAGAGATCTTTAGCTGATTTAGATGAAAGTTCTTTAGAATCTGTTGGAG AAGATAATGATGACATAGATATTGATGGCGGGGAGAGACGGCATGGTCGAGACCTTCGTGATGTAAAAATAAAGTTTGCGGAACTTGATGAAAGTGGAAG AGATGACTTGTTGAGACACAGGCCTTCACGTGGATGGACAAGACACAGAGGGAGGGGGAGGGTTAATGAAACAGCACTCAAGAATGAACAGGTTTCAACA TCTCCAGATTCTGGTAGTCGATCAGGATCAGGATCAGGACCAGGACGGAGTGCTAGAGATAGGAATTCAAAGAATCTTTTGGATGAGAAGAAAGGACCAG ATACAAGAAAGTTCCAGGGAAATATTCTTTCCGATGGTTTGAATGTGGAAAGAGACGATAATGATGATTGCTTTCAGGGTTGCAGGATCGGAACCAAAGA CATTTCTGATCTGGTGAAGAAAGCAGTTCAAGCTGCTGAATTGGAAGCTATAGGAGCAAATACACCTGCAGGTGCCATCAAAGCTGCTGGTGATGCTGCT GCTGAATATGGGTCTCGTCTTCTGATTGCACCTGCGCCTTCACCCACTGCAGGAGATACTGCTGCTGGAATTAATGGATGCTTGTTATTGCTTCGACATC CAAAATCGGGGAACGCAACAAACTATCTCCTTAGTCATGATAATGAGGGAGCAGTGCTCCAAGAACTTCACTGGTTCAAGCAATCATATACATCTTGGTT TCTTGGCGATTATGTTTCTCAAGATGGCAGCCTTTACACTGCCACTCCTGTCGATCCTGTTTTCATTTTGTTGCCCATTTTTGAGGAAGCTAGAATGAAG AAGAGGGATGATCTAGGGAAGTTCAGGCAATTAGATGAGATAATATTCATCAATGACTATCCTGGGTATCATCATCTAATGTCCATTGCAGAGAACTGTA TGGGAGTAGTTTGTGAAATCAAAGAAATTGGATCTTCCAAGTTTTTTCGGCTGGATGATTCAAAGGTTTTAGCTTGGCTGTACTGCAAGGTGTTCCAATT AAAAAAGGCTCTATGCTCATTGGACAAGAACTATGCTGCTCAAGACGAGAAATATACATTAGCTGGAGCGGTTTCAATATTAGGGGAGTACGTGAAGGAT GAGCCATGGTTGATGCTTCTGTTAGATCATTTGAAATTAAATTTACTCGAGGTAACTAGTAAAGTACCGGAAGCTGAAAATTTTCCGACCAATGCCGAAC ATAATCCAGTTTCTTCCAGTTTGTTACAGGAAAAGGATAGGAGTGAAGATAAAACAAAAAGAAGTGGAAAGCAAGCTAAAAAGGCCAAGGTGGAGACAGA ATCAAGGAACATAAGAGAAATGTTTCGCAGGGCTTGCAGGAAAAGCTAA
AA sequence Show only first row Show all	>Potri.006G280600.4 pacid=42770040 polypeptide=Potri.006G280600.4.p locus=Potri.006G280600 ID=Potri.006G280600.4.v4.1 annot-version=v4.1 MMEGSNSLDDSPSRQAQAQTRTHSGGGGGGDAPSNPSQPQPQLQSQSQREGEEVDETKKEEAELIEKAQKRIDKITSSPDNPNPTLLHALSSLLETQESL ARQLPEATLENNIRAADERSLADLDESSLESVGEDNDDIDIDGGERRHGRDLRDVKIKFAELDESGRDDLLRHRPSRGWTRHRGRGRVNETALKNEQVST SPDSGSRSGSGSGPGRSARDRNSKNLLDEKKGPDTRKFQGNILSDGLNVERDDNDDCFQGCRIGTKDISDLVKKAVQAAELEAIGANTPAGAIKAAGDAA AEYGSRLLIAPAPSPTAGDTAAGINGCLLLLRHPKSGNATNYLLSHDNEGAVLQELHWFKQSYTSWFLGDYVSQDGSLYTATPVDPVFILLPIFEEARMK KRDDLGKFRQLDEIIFINDYPGYHHLMSIAENCMGVVCEIKEIGSSKFFRLDDSKVLAWLYCKVFQLKKALCSLDKNYAAQDEKYTLAGAVSILGEYVKD EPWLMLLLDHLKLNLLEVTSKVPEAENFPTNAEHNPVSSSLLQEKDRSEDKTKRSGKQAKKAKVETESRNIREMFRRACRKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20325			unknown protein		Potri.006G280600 [exp]	0	1
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	1.00	0.9619
AT4G01810			Sec23/Sec24 protein transport ...		Potri.002G187100 [exp]	1.41	0.9413
AT3G14470			NB-ARC domain-containing disea...		Potri.019G036850 [exp]	2.44	0.9292
AT3G07870			F-box and associated interacti...		Potri.001G396800 [exp]	2.82	0.9098
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	2.82	0.9229
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.013G046150 [exp]	3.74	0.9128
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.002G221600 [exp]	4.24	0.9075
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	4.47	0.9215
AT1G66920			Protein kinase superfamily pro...		Potri.015G018600 [exp]	4.58	0.8859
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	4.89	0.9206	HMGB906,ATHMG.1

Compare expression of checked genes

Potri.006G280600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.