Plant FIBer expression Database

Potri.006G280800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G53440 159 / 6e-43 Homeodomain-like superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G000700
[exp]
464 / 5e-161 AT3G53440 200 / 1e-58 Homeodomain-like superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002159
[exp]
230 / 2e-69 AT3G53440 195 / 2e-56 Homeodomain-like superfamily protein (.1.2)
Lus10039632
[exp]
227 / 1e-68 AT3G53440 186 / 5e-53 Homeodomain-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.006G280800.1 pacid=42767806 polypeptide=Potri.006G280800.1.p locus=Potri.006G280800 ID=Potri.006G280800.1.v4.1 annot-version=v4.1
ATGCCTAGAAGGACAAGAAACTCAGATAAACTCTCCTCCTCCTCTTCCTCAGCCACCACCCTGAAACCACCCCAAGATTCCAGTGCCCGCAAGCCAGACT
TTCACAACAATGGCCTTTCCCCGCAAAAACATAATCCCACTGAAAAAAGATCCCTAGTTTGCGGCATTCCCTGTTCCGGGTCCACTAAATTTCCAATCTC
TCGTTACAATAGGGTGCGTGAGGTTTCGACTCCTAGGAGATCCTTAAGGCTTTCTTTGTTGCAGAGCCCAAATGCAAATCAACTTGTCAGCAACAAGATT
AGCAATTGCAAGCCCGATGATAGGAGGGTTGTGTCTTCGAATGAAGTAAAAGGTGAAGTGGAAATGAAAAAGGTTTCGACTCGTAGGAGATCTTTAAGGC
TTTCTTTGTTGCAGGGCACAAATGCAAATCAACTTGTCAGCAACAAGACTAGTGATTGCAAGTCTGATGATACGAGGGTTTTGTCTTCGAATGAAGTAAA
AGGTGAAGTGGAAATGAAAACCAGTAACAGGAGTTGTGTTATTACTTTTGGATTTAAAGCAGCCAAAGCAAGAGTGAGTGCCATTGATGTCTGTGAAACA
AATGAACAAGAAATTAATAATAACAACAGGAAGAGAAAGAGAACAGATGAAGCTAATAAAAGGGCTGTTCACGAGTGGACAAAGGAGCAAGAAATGGTTT
TGCAAAGAGCTTATTTTACCACCAAGCCTACCCCTCATTTCTGGAAGAAGGTTTCTAAGCTGGTTCCTGGAAAGTCTGCACAGGATTGTTTTGAGAAAGT
AAACTCTGATCATATGACTCCACCTCAAGCTTTGCGGCGATCAAGGGCTAAGAGAATAAACTCATCACCTCTTGAAAGCTCTTCGCTCTCTGCTAGCAAG
ATACTTCATCCATCCGGCCCAAAGAGTAAAAGATTGAGATGTGAGCAGAAGGATCATCTCGCACATAAAAATGTTAGAGAGTTATTGCAAAATCAGAATC
GAATGGACCGAGATTATGAAGCAGACTTTTTCTCCATTTTTGAACCTGACATGAATCCATCTACTCAAGATTCTCAGCTGGCTGTTAAAATTTCCACCCC
CGAGCACTCAAAAGTAAAACAGGGTTTTCTTCACAAGTTCCATGAGAAATCTTCTTCTGGCCATAAAAAGCCCCTTTCAAGATTGAGTTCATGTGGGATA
AATATTGTTAGTCCCCCAGTACTGAAGCAGGTGAAAAACAGGGCTTTACATGAAAAGTATATTGACCAATTACACTGCAGGGAAGCTAGGAGAAAGGCAG
CATATGCACGGGCTGGAAAATCAGCGGGAAAAAAGAATAGTGGGGAGATCAATGTTCAGAAAATAGATGTGGTTAGAGCTGCAAAAAATTCCCTGGTTTC
TGATGTACGAGATGCTCTTAATCACCTCCATGATCTACAAGCTAATGCCAGCAGCTCTTCTGATTTTGATGATGATGGTGTTGGCAGCGATGATGATGGA
GGTGAAAGTGGACTATGA
AA sequence
>Potri.006G280800.1 pacid=42767806 polypeptide=Potri.006G280800.1.p locus=Potri.006G280800 ID=Potri.006G280800.1.v4.1 annot-version=v4.1
MPRRTRNSDKLSSSSSSATTLKPPQDSSARKPDFHNNGLSPQKHNPTEKRSLVCGIPCSGSTKFPISRYNRVREVSTPRRSLRLSLLQSPNANQLVSNKI
SNCKPDDRRVVSSNEVKGEVEMKKVSTRRRSLRLSLLQGTNANQLVSNKTSDCKSDDTRVLSSNEVKGEVEMKTSNRSCVITFGFKAAKARVSAIDVCET
NEQEINNNNRKRKRTDEANKRAVHEWTKEQEMVLQRAYFTTKPTPHFWKKVSKLVPGKSAQDCFEKVNSDHMTPPQALRRSRAKRINSSPLESSSLSASK
ILHPSGPKSKRLRCEQKDHLAHKNVRELLQNQNRMDRDYEADFFSIFEPDMNPSTQDSQLAVKISTPEHSKVKQGFLHKFHEKSSSGHKKPLSRLSSCGI
NIVSPPVLKQVKNRALHEKYIDQLHCREARRKAAYARAGKSAGKKNSGEINVQKIDVVRAAKNSLVSDVRDALNHLHDLQANASSSSDFDDDGVGSDDDG
GESGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G53440 Homeodomain-like superfamily p... Potri.006G280800
[exp]
0 1
AT3G52170 DNA binding (.1.2) Potri.008G029500
[exp]
1.73 0.8406
AT3G11110 RING/U-box superfamily protein... Potri.008G071000
[exp]
8.06 0.8536
AT5G58930 Protein of unknown function (D... Potri.001G248400
[exp]
11.87 0.7294
AT3G14580 Pentatricopeptide repeat (PPR)... Potri.001G379500
[exp]
13.03 0.7978
AT1G48570 zinc finger (Ran-binding) fami... Potri.015G038200
[exp]
14.89 0.8469
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.013G032600
[exp]
17.54 0.8139
AT4G21705 Tetratricopeptide repeat (TPR)... Potri.004G042500
[exp]
18.43 0.7804
AT5G53860 EMB64, EMB2737 EMBRYO DEFECTIVE 64, embryo de... Potri.011G118000
[exp]
19.07 0.8003
AT1G18485 Pentatricopeptide repeat (PPR)... Potri.015G047600
[exp]
20.85 0.7859
AT1G07740 Tetratricopeptide repeat (TPR)... Potri.003G204100
[exp]
21.26 0.8330

Potri.006G280800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.