Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31130 252 / 4e-86 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G000600 [exp] 323 / 4e-114 AT4G31130 277 / 4e-96 Protein of unknown function (DUF1218) (.1) Potri.007G002900 [exp] 185 / 2e-59 AT4G31130 179 / 4e-57 Protein of unknown function (DUF1218) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014344 [exp] 272 / 6e-94 AT4G31130 292 / 7e-102 Protein of unknown function (DUF1218) (.1) Lus10026052 [exp] 270 / 6e-93 AT4G31130 287 / 6e-100 Protein of unknown function (DUF1218) (.1) Lus10030037 [exp] 116 / 8e-34 AT4G31130 134 / 2e-41 Protein of unknown function (DUF1218) (.1) Lus10030038 [exp] 0 / 1 AT4G31130 107 / 7e-31 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [poplar] [flax] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Potri.006G280900.1 pacid=42767771 polypeptide=Potri.006G280900.1.p locus=Potri.006G280900 ID=Potri.006G280900.1.v4.1 annot-version=v4.1 ATGGCTGTTACAATGAAGCAGATGGCTCTCGCAGTCACGGTCCTTGGCCTCATCTCTTTTGTTTTTGGCATTGTCGCTGAAAATAAGAAGCCTGCTGCTG GAACTCCAATACCTGGAAAAGGTGTTGTAATTTGCAAGTATTCATCCGATCCCACAGTACCTTTGGGGTTCCTCTCAGTTGGATTTCTGGTAGCAACTAC AGTCGTTGGTTATTTATCTCTCTTCTATCCTTATAAAGGAAAATCAGTCCCCAACTCTGCTTTGTTTCAGAGCACCAGTTTCTCCATCTTCGTCAACATT GCTGTGTTTACGGCAGGATTGGCAGCAGCATTGATATTGTGGCCAACAATTCAAGAGCACTCTCACTTGAGTCACACCGTTCATCACGATCCTGACTATC AATGCCCCACTGCCAAGACCGGTCTCCTTGGTGGCGGTGCTTTAGTTTCTCTCGATTCAGCCCTTTTCTGGTTAGTCGCACTCATGTTAGCAGACAATGC TCGGGAGGACTACTTTGATGAAACGGAAAAGGATGTCAAGGGGGGACATCATGATGAGGTGCTTGAGGGTGATTTTGATGCGCCTGCACATCTCAAGGGC ACTGCATAA
AA sequence Show only first row Show all	>Potri.006G280900.1 pacid=42767771 polypeptide=Potri.006G280900.1.p locus=Potri.006G280900 ID=Potri.006G280900.1.v4.1 annot-version=v4.1 MAVTMKQMALAVTVLGLISFVFGIVAENKKPAAGTPIPGKGVVICKYSSDPTVPLGFLSVGFLVATTVVGYLSLFYPYKGKSVPNSALFQSTSFSIFVNI AVFTAGLAAALILWPTIQEHSHLSHTVHHDPDYQCPTAKTGLLGGGALVSLDSALFWLVALMLADNAREDYFDETEKDVKGGHHDEVLEGDFDAPAHLKG TA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31130			Protein of unknown function (D...		Potri.006G280900 [exp]	0	1
AT1G22790			unknown protein		Potri.005G196300 [exp]	2.23	0.6981
AT2G14110			Haloacid dehalogenase-like hyd...		Potri.017G043700 [exp]	9.69	0.7514
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	13.78	0.6629
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.013G082500 [exp]	14.28	0.7366
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Potri.003G053400 [exp]	14.83	0.7316
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Potri.014G167200 [exp]	15.49	0.6373
AT2G18630			Protein of unknown function (D...		Potri.005G127401 [exp]	15.90	0.6627
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.014G069600 [exp]	16.43	0.6528
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G148000 [exp]	18.89	0.6355
AT3G19950			RING/U-box superfamily protein...		Potri.007G074014 [exp]	20.44	0.6416

Compare expression of checked genes

Potri.006G280900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.