Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31120 912 / 0 PRMT5, SKB1 ,ATPRMT5 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G000500 [exp] 1105 / 0 AT4G31120 1063 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2) Potri.007G000300 [exp] 43 / 0.0004 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009545 [exp] 967 / 0 AT4G31120 1058 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2) Lus10020369 [exp] 897 / 0 AT4G31120 988 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2) Lus10010162 [exp] 43 / 0.0005 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05185 [poplar] [flax] PRMT5 PRMT5 arginine-N-methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G281000.1 pacid=42770255 polypeptide=Potri.006G281000.1.p locus=Potri.006G281000 ID=Potri.006G281000.1.v4.1 annot-version=v4.1 ATGCCGCTGGGTGAAAAGGCAGGATTTGAAAAGAGTCAATCTCGATACTGCGGAGTGGAGACAGAGTTCAACGATAACGTGCCTCAGCTTCTCAATTTTA ATCTCTTTACCAGCGCCTTTGACTTCGTTGTCGCTTCTCTGATGAATCCCTCATATCGGCCCAGCTTGTTAGAAAAAGACGGGGTTCTTCCATTTGCTGC ATCAGACCTAGTTTTGAGTCCCTCTCAGTGGAGCAGTCATGTTGTTGGAAAAATTAGTTCTTGGATTGACTTGGATTCAAAGGATGAAACTCTTCGGACG GCTTCCGAAACCACATTGAAGCAAGAAATAGCTTGGGCTAATCATCTCTCTATACAGGCATGCATTCTTCCTTCTCCCAAGGGTGCATCCTGTGTTAATT ATGCTAGGTGTGTAAATCAGATTTTGCTGGGCCTCAACAATATGCAGTTGTGGCTTAGGATTCCGCTGGTGAAGACTGATGATGATGATGTTATGGATGT TAACTCTACTAGCTTTATTGATTCCTGGGAATTATGGAATGCATTTCGTCTTCTCTGTGAACATCACAATCAGCCTTCCCTGCCTTCAGTGAACTCGTTT GGCCGTTGGTTTGGAGAACCTGTTACAGCAGCCATAATTAATATGGATTCTTTCCTAACAAATGGATGGGGTTATCCATGCCTGTCAAAGTGCCATCAGA AGCTGATTACTGGAGCAACTTTAGCGTTGAAACTTCCCCAGACATTTAGTCCAGTATATTTTGATGTTATTATTATTATTTCTGGCAAACCTGTACACAG TATTCCCAGGCCAAGTTCAGATACTGCCAATAATTTTGATAATAACAGTGACAGTCTGCGAAGACATCCCCTCAGGCCATATTTGGACTATGTTGGTTTT CTCTTCCGAAGTATGGATCCCATTCCTGAGCAAGAATGTTTTGAACCTCTCATGGATAATCTAGAAGCCCAAACATACGAGACTTTTGAAAGAAACTCAA AGAAATATATCCAGTACCAAAGGGCAATCAGTAAAGCTTTGCTGGACAGAGTTCCTGATGAAGAAGCAAGTGCAGTCACTGTACTGATGGTTGTTGGAGC AGGACGTGGACCTCTTGCAGCTGAAGAAACTGGACATAAGTTGAAAGTTTATGCCGTGGAGAAAAATCCCAATGCAGTTGTCACACTTCATAGTTTGGTT AAGCTAGAAGGATGGGAAGATATTGTTACCATAATTTCTTGTGATATGCGTTACTGGGATGCTTCTGAGAAATCTGATATCTTGGTTAGTGAATTACTGG GTTCTTTTGGTGACAATGAGCTATCACCCGAATGCCTTGATGGTGCTCAAAGGTTCTTGAAGCAAGATGGAATCTCAATACCATCATCTTACACTAGCTT TATCCAACCGGTGACAGCTGCCAAGCTATATAATGATGTTAAGTCGCACAAAGATCTTGTACACTTTGAGACTGCATATGTTGTCAAACTGCATAATGTA GCAAGGCTCGCTCCTTCCCAAACTGTCTTTACGTTCACCCATCCAGATTACTCAACCAAAAAAAGCAATCAACGCTACAAAAGGTTGCAGTTTGAGATAC CATGTGACACTGGATCAGCTATGGTTCATGGATTTGCTGGGCATTTTGATGCCAAGCTTTACAAAGATGTTCACCTTGGCATTGAACCATCAACGGCGAC ACCAAACATGTTCAGTTGGTTTGCAATGTTCTTCCCTTTTAGGACACCAGTTTGCATAAAGTCGGGCTCTCCTTTAGAAGTACATTTTTGGCGCTGTTGT GGTTCTTCTAAGGTTTGGTATGAATGGTGTGTGACATCTCCCAACTCATTAGCTATTCACAACATTAGTGGTCGTTCATTCTGGGTTGGTCTCTAG
AA sequence Show only first row Show all	>Potri.006G281000.1 pacid=42770255 polypeptide=Potri.006G281000.1.p locus=Potri.006G281000 ID=Potri.006G281000.1.v4.1 annot-version=v4.1 MPLGEKAGFEKSQSRYCGVETEFNDNVPQLLNFNLFTSAFDFVVASLMNPSYRPSLLEKDGVLPFAASDLVLSPSQWSSHVVGKISSWIDLDSKDETLRT ASETTLKQEIAWANHLSIQACILPSPKGASCVNYARCVNQILLGLNNMQLWLRIPLVKTDDDDVMDVNSTSFIDSWELWNAFRLLCEHHNQPSLPSVNSF GRWFGEPVTAAIINMDSFLTNGWGYPCLSKCHQKLITGATLALKLPQTFSPVYFDVIIIISGKPVHSIPRPSSDTANNFDNNSDSLRRHPLRPYLDYVGF LFRSMDPIPEQECFEPLMDNLEAQTYETFERNSKKYIQYQRAISKALLDRVPDEEASAVTVLMVVGAGRGPLAAEETGHKLKVYAVEKNPNAVVTLHSLV KLEGWEDIVTIISCDMRYWDASEKSDILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFIQPVTAAKLYNDVKSHKDLVHFETAYVVKLHNV ARLAPSQTVFTFTHPDYSTKKSNQRYKRLQFEIPCDTGSAMVHGFAGHFDAKLYKDVHLGIEPSTATPNMFSWFAMFFPFRTPVCIKSGSPLEVHFWRCC GSSKVWYEWCVTSPNSLAIHNISGRSFWVGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Potri.006G281000 [exp]	0	1
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Potri.017G067900 [exp]	6.40	0.6918
AT1G03180			unknown protein		Potri.002G053801 [exp]	6.78	0.7723
AT4G20325			unknown protein		Potri.006G281101 [exp]	46.13	0.7059
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Potri.010G253301 [exp]	47.11	0.6774
					Potri.001G304750 [exp]	48.83	0.7102
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Potri.008G172500 [exp]	144.56	0.6333

Compare expression of checked genes

Potri.006G281000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.