Plant FIBer expression Database

Potri.006G281101 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G20325 202 / 3e-65 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G280600
[exp]
304 / 5e-101 AT4G20325 318 / 3e-105 unknown protein
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF09468 RNase_H2-Ydr279 Ydr279p protein family (RNase H2 complex component) wHTH domain
Representative CDS sequence
>Potri.006G281101.1 pacid=42769486 polypeptide=Potri.006G281101.1.p locus=Potri.006G281101 ID=Potri.006G281101.1.v4.1 annot-version=v4.1
ATGATTCTAATACTAACTGGTATCCTGACCTGCTTTGTGTTTGTTTCCTTATCCCTTCATTTGTTCTTTCTTCAAACAGATGGCAGCCTATACACTGCCA
CTCCTGTCGATCATGTTTTCATTTTGTTGCCCATTTTTGAGGAAGCTAGAATGAAGAAGAGGGATGATCTAGGGAAGTTCAGGCAATTAGATGAGATAAT
ATTCATCAATGACTATCCTGGGTATCAGCATCTAATGTCCATTGCAGAGAACTGTATAGGAGTAGTTTGTGAAATCAAAGAAATTGGATCTTCCAACTTT
TTTCGGCTGGATGATTCAAAGGTTTTAGCTTGGCTGTACTGCAAGGTGTTCCAATTAAAAAAGGCTCTATGCTCATTGGACAAGAACTATGCTGCTCAAG
ACGAGAAATATACATTAGCTGAGGCGGTTTCAATATTAAAGGAGTACGTGAAGGATGAGCCATGGTTGATGCTTCTGTTAGATCATTTGAAATTAAATTT
ACTCGAGGTAACTAGTAAAGTACCAGAAGCTAAAAATTTTCCGACCAATGCCGAACATAATCCAGTTTCTTCCAGAGTGAAGATAAAACAAAGAGAAGTG
GAAAGCAAGCTAAAAAGGCCAAGGTGGAGACAGAATCAAGGAACATAA
AA sequence
>Potri.006G281101.1 pacid=42769486 polypeptide=Potri.006G281101.1.p locus=Potri.006G281101 ID=Potri.006G281101.1.v4.1 annot-version=v4.1
MILILTGILTCFVFVSLSLHLFFLQTDGSLYTATPVDHVFILLPIFEEARMKKRDDLGKFRQLDEIIFINDYPGYQHLMSIAENCIGVVCEIKEIGSSNF
FRLDDSKVLAWLYCKVFQLKKALCSLDKNYAAQDEKYTLAEAVSILKEYVKDEPWLMLLLDHLKLNLLEVTSKVPEAKNFPTNAEHNPVSSRVKIKQREV
ESKLKRPRWRQNQGT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G20325 unknown protein Potri.006G281101
[exp]
0 1
AT1G13050 unknown protein Potri.008G184500
[exp]
3.16 0.8307
AT5G63720 KPL kokopelli (.1) Potri.007G098300
[exp]
28.28 0.7542
AT3G47630 unknown protein Potri.001G076200
[exp]
32.86 0.7724
AT1G25350 OVA9 ovule abortion 9, glutamine-tR... Potri.010G122932
[exp]
36.94 0.7899
AT4G13430 ATLEUC1, IIL1 isopropyl malate isomerase lar... Potri.008G172500
[exp]
42.35 0.6993
AT4G31120 PRMT5, SKB1 ,AT... PROTEIN ARGININE METHYLTRANSFE... Potri.006G281000
[exp]
46.13 0.7059
AT5G36930 Disease resistance protein (TI... Potri.019G017082
[exp]
47.05 0.7747
AT1G55540 EMB1011 Nuclear pore complex protein (... Potri.001G001250
[exp]
57.00 0.7622
AT3G14470 NB-ARC domain-containing disea... Potri.017G015300
[exp]
69.74 0.7653
AT3G21760 HYR1 HYPOSTATIN RESISTANCE 1, UDP-G... Potri.006G007100
[exp]
73.89 0.7180

Potri.006G281101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.