Plant FIBer expression Database

Potri.006G281200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31080 397 / 8e-137 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
AT2G24330 379 / 8e-130 Protein of unknown function (DUF2296) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G281400
[exp]
632 / 0 AT4G31080 399 / 2e-137 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009547
[exp]
435 / 2e-151 AT4G31080 457 / 2e-160 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
Lus10020370
[exp]
422 / 2e-146 AT4G31080 451 / 1e-157 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
Lus10009546
[exp]
405 / 7e-140 AT4G31080 434 / 3e-151 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0167 Zn_Beta_Ribbon PF10058 zinc_ribbon_10 Predicted integral membrane zinc-ribbon metal-binding protein
Representative CDS sequence
>Potri.006G281200.3 pacid=42768801 polypeptide=Potri.006G281200.3.p locus=Potri.006G281200 ID=Potri.006G281200.3.v4.1 annot-version=v4.1
ATGGGCGGGGAGGACAATAAGGAGACAGCCACCGATAGTCAAGACTCATCATCACCTGCCGTTAAGAAGCGCAGCGGCGGAGGTATTCTATCCCGTGTTT
GGAAGGCTGTCTTTAGACCTCACGGTGACGATTTCGAGAAGAGACTGCAACACATTTCTAAGGAAGAGGCTGCTGTTTTATCTAGAATCAATCGGAGATC
CCGCAATCGGAGGAAGATCACTCGCCATCTCATTGTTTTCTCTGTCCTTTTTGAGGTTATTGCAGTCGGTTATGCTATCATGACCACAAGATCAATGGAT
ATGAATTGGAAGATGAGGGCTTTTCGAATCTTACCAATGTTTCTTTTGCCTGCTTTATCATCCCTTGCGTATTCTGCCTTTGTAAGCTTCACCAGGATGT
GTGATCGCAGAGATCAAAAAACTCTGGAGAGGCTTCAGGCTGAAAGGCAAGCGAAAATTGATGAACTTAAAGAGAAGACAAATTATTATTCGACTCAGCA
GCTCATTCAGAGATATGATCCTGACCCGGCAGCTAAGGCAGCTGCTGCAACTGTCCTTGCATCTAAGCTGGGTGCAGATTCTGGCTTGAAAGTGTACGTT
GGAGATGAATCTAAGCCAACTCTTCCTACAGGGAAGAGTAATGATGCTGAGTTTGTGCAAGCTAGTGGGCTCAGAAATAGAAAGCAAGTGCACACAACAT
CCAGTAGTTCAGGGAGCACTCTGGTGCAGCATTCTGATGAAGAAATGCCACTTTCTGTGCAAAGTGAAGGTCCTCTGACATCTGAGCATAATCAGCTTGT
TGTTGAGCATTACACTCCGCAGGGATATACCACATATGATGGGGGATGGGTTGCTCGAATTGCAGCATTACTTGTGGGTGAGGATCCAACACAATCATAT
GCACTGATATGTGGCAACTGCCATATGCACAATGGGCTTGCTAGGAAGGAGGATTTTCCATACATTACATATTACTGCCCACATTGTCGTGCCCTGAACC
AGCCAAAACAACTAGAGGAGCGTGTTTCTGGTTCTAGTTCCCCCGGATTGAGCACTTTGAGGAAAGGGACGGGGGGTAGCGCTGAACCCATCAGCAATGC
TGGTGATTCTCCGAGTGATGATAGTATACTTGCAAGCAACAGCCTTGATGGAGCTGGTTCTGAGATTGAGGAAGTAACAGAGACGATAGCATCAAGGGAG
GTTACTAGTTAA
AA sequence
>Potri.006G281200.3 pacid=42768801 polypeptide=Potri.006G281200.3.p locus=Potri.006G281200 ID=Potri.006G281200.3.v4.1 annot-version=v4.1
MGGEDNKETATDSQDSSSPAVKKRSGGGILSRVWKAVFRPHGDDFEKRLQHISKEEAAVLSRINRRSRNRRKITRHLIVFSVLFEVIAVGYAIMTTRSMD
MNWKMRAFRILPMFLLPALSSLAYSAFVSFTRMCDRRDQKTLERLQAERQAKIDELKEKTNYYSTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVYV
GDESKPTLPTGKSNDAEFVQASGLRNRKQVHTTSSSSGSTLVQHSDEEMPLSVQSEGPLTSEHNQLVVEHYTPQGYTTYDGGWVARIAALLVGEDPTQSY
ALICGNCHMHNGLARKEDFPYITYYCPHCRALNQPKQLEERVSGSSSPGLSTLRKGTGGSAEPISNAGDSPSDDSILASNSLDGAGSEIEEVTETIASRE
VTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G31080 Protein of unknown function (D... Potri.006G281200
[exp]
0 1
AT1G07410 ATRAB-A2B, AtRA... ARABIDOPSIS RAB GTPASE HOMOLOG... Potri.006G000300
[exp]
1.73 0.9226 RAB11.6
AT3G22290 Endoplasmic reticulum vesicle ... Potri.006G023900
[exp]
2.23 0.9319
AT3G03800 ATSYP131, SYP13... syntaxin of plants 131 (.1) Potri.019G036700
[exp]
3.16 0.9274 SYP131.2
AT3G14450 CID9 CTC-interacting domain 9 (.1) Potri.001G377500
[exp]
4.89 0.8792
AT5G58100 unknown protein Potri.006G080700
[exp]
15.09 0.8493
AT2G03350 Protein of unknown function, D... Potri.008G092500
[exp]
16.49 0.9076
AT2G32580 Protein of unknown function (D... Potri.014G155600
[exp]
18.43 0.9053
AT1G35780 unknown protein Potri.005G165500
[exp]
20.78 0.8829
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.004G074500
[exp]
23.06 0.8986
AT2G38580 Mitochondrial ATP synthase D c... Potri.006G110400
[exp]
23.36 0.8534

Potri.006G281200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.