Plant FIBer expression Database

Potri.006G281400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31080 399 / 1e-137 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
AT2G24330 371 / 2e-126 Protein of unknown function (DUF2296) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G281200
[exp]
612 / 0 AT4G31080 397 / 1e-136 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009547
[exp]
419 / 5e-145 AT4G31080 457 / 2e-160 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
Lus10020370
[exp]
415 / 2e-143 AT4G31080 451 / 1e-157 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
Lus10009546
[exp]
389 / 1e-133 AT4G31080 434 / 3e-151 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0167 Zn_Beta_Ribbon PF10058 zinc_ribbon_10 Predicted integral membrane zinc-ribbon metal-binding protein
Representative CDS sequence
>Potri.006G281400.1 pacid=42770616 polypeptide=Potri.006G281400.1.p locus=Potri.006G281400 ID=Potri.006G281400.1.v4.1 annot-version=v4.1
ATGGGCAGGGGGGACAGTAAGGAGACAGCAGGCATAGCCGACAGCGATTCTGCTAAAATGACGGGGAGGAGCGGAAGCGGAGGTTTCCTATCCCGTCTTT
GGAAGGCTGTCTTTAGACCGCATGGCGATGACTTCGAGAAGAGACTGCAACACATTTCTAAGGAAGAGGCTGCTGTTTTGGCTAGAATCAATCGGAGATC
CGGTACTCGGAGGAAGATCATTCGCCATCTTATTGTTTTCTCTGTCCTTTTTGAGGTCCTCGCAGTCGGCTATGCTATTATGACTACAAGATCAATGGAT
TTGAATTGGAAGATGAGAGCTTTTCGAGTCTTACCAATGTTTCTTCTGCCTGCTTTATCGTCCCTTGCTTATTCCGCCTTTGTAAGCTTCACCAGGATGT
TTGATCGCAGAGATCAAAACACTCTGGAGAGGCTTCGGGCTGAAAGGCAAGCAAAAATTGATGAGCTTAAAGAGAAGACAAATTACTATACGACACAGCA
GCTAATTCAGAGATATGATCCTGACCCAGCAGCTAAGGCAGCTGCTGCAACTGTCCTTGCATCTAAGCTGGGTGCGGATTCTGGCATGAAGGTTTATCTG
GGAGATGAATCTAAGCCTACTACTCCTACAGGGAAGAGTAATGACGTTGAGCCTGTACAAGGTAGTGGACTCAGAAATAGAAAGCAAGTGCACACAAGGT
CCAGTGGTGCAGGGAGCACGCTGGTGCAGCATTCTGGTGAAGAAATGCCACTTTCTGTGCAAAGTGAAGGTCCTCTGACATCTGAGCATAGTCAGCTTGT
TGCTGAGCATGGCAATCTGCAGGGATATACTGCATATGATGGGGGATGGGTTGCTCGAATTGCAGCATTGCTTGTGGGTGAGGATCCAACACAATCATAT
GCACTGATATGTGGCAACTGCCATATGCACAATGGGCTTGCTAGGAAGGAGGATTTTCCATACATTACATATTACTGCCCACATTGTCGTTCCCTGAACC
AGCCAAAACAACTAGAAGAGCGTGTTTCTGGTTCTAGTTCCCCTGATTTGAGCACTTTGAGAAAAGGGACGGGGGGTAGCGCTGAACCCATCAGCAATGG
TGGTGATTCTCCGAGTGATGATATTATACTTGCAAGGAACAGCGGTGATGGAGCTGGTTCTGAGATTGTGGAAGTAACAGAGACGATAGCATCACGGGAG
GTTACTAGTTGA
AA sequence
>Potri.006G281400.1 pacid=42770616 polypeptide=Potri.006G281400.1.p locus=Potri.006G281400 ID=Potri.006G281400.1.v4.1 annot-version=v4.1
MGRGDSKETAGIADSDSAKMTGRSGSGGFLSRLWKAVFRPHGDDFEKRLQHISKEEAAVLARINRRSGTRRKIIRHLIVFSVLFEVLAVGYAIMTTRSMD
LNWKMRAFRVLPMFLLPALSSLAYSAFVSFTRMFDRRDQNTLERLRAERQAKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGMKVYL
GDESKPTTPTGKSNDVEPVQGSGLRNRKQVHTRSSGAGSTLVQHSGEEMPLSVQSEGPLTSEHSQLVAEHGNLQGYTAYDGGWVARIAALLVGEDPTQSY
ALICGNCHMHNGLARKEDFPYITYYCPHCRSLNQPKQLEERVSGSSSPDLSTLRKGTGGSAEPISNGGDSPSDDIILARNSGDGAGSEIVEVTETIASRE
VTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G31080 Protein of unknown function (D... Potri.006G281400
[exp]
0 1
Potri.003G152800
[exp]
5.91 0.7248
AT1G78540 STATLB, ATSHB STAT-TYPE LINKER-SH2 DOMAIN FA... Potri.001G380900
[exp]
7.93 0.6709
AT2G43230 Protein kinase superfamily pro... Potri.007G124000
[exp]
20.19 0.6582
AT3G15390 SDE5 silencing defective 5 (.1.2) Potri.004G042100
[exp]
25.69 0.6605
AT5G45110 ATNPR3, NPR3 NPR1-like protein 3 (.1) Potri.015G116900
[exp]
26.17 0.6823
AT5G58700 ATPLC4 phosphatidylinositol-speciwc p... Potri.001G252100
[exp]
39.05 0.6430
AT5G23720 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, ... Potri.012G105800
[exp]
55.69 0.6364 Pt-PHS1.1
AT3G47400 Plant invertase/pectin methyle... Potri.012G126900
[exp]
62.04 0.6607
AT1G53730 SRF6 STRUBBELIG-receptor family 6 (... Potri.003G073700
[exp]
62.20 0.6056
AT3G19553 Amino acid permease family pro... Potri.009G090300
[exp]
79.48 0.5891 PtrLAT7

Potri.006G281400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.