Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12000 960 / 0 Phosphofructokinase family protein (.1) AT4G04040 931 / 0 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G76550 390 / 1e-128 Phosphofructokinase family protein (.1) AT1G20950 385 / 5e-127 Phosphofructokinase family protein (.1) AT5G56630 62 / 6e-10 PFK7 phosphofructokinase 7 (.1) AT4G08876 54 / 2e-09 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related (.1) AT4G26270 57 / 3e-08 PFK3 phosphofructokinase 3 (.1) AT5G47810 55 / 9e-08 PFK2 phosphofructokinase 2 (.1) AT4G29220 51 / 2e-06 PFK1 phosphofructokinase 1 (.1) AT2G22480 48 / 1e-05 PFK5 phosphofructokinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G015900 [exp] 1110 / 0 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.004G003800 [exp] 1009 / 0 AT1G12000 946 / 0.0 Phosphofructokinase family protein (.1) Potri.011G015600 [exp] 696 / 0 AT1G12000 637 / 0.0 Phosphofructokinase family protein (.1) Potri.005G257800 [exp] 393 / 5e-130 AT1G76550 1065 / 0.0 Phosphofructokinase family protein (.1) Potri.002G003100 [exp] 380 / 4e-125 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1) Potri.016G002700 [exp] 56 / 4e-08 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.018G069200 [exp] 54 / 2e-07 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.006G152600 [exp] 53 / 5e-07 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 48 / 2e-05 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038700 [exp] 883 / 0 AT1G12000 875 / 0.0 Phosphofructokinase family protein (.1) Lus10037972 [exp] 489 / 2e-169 AT4G04040 498 / 9e-173 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) Lus10016047 [exp] 394 / 4e-130 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10025167 [exp] 392 / 2e-129 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10008812 [exp] 57 / 2e-08 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10005488 [exp] 57 / 3e-08 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10011143 [exp] 56 / 5e-08 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 56 / 5e-08 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10006032 [exp] 55 / 1e-07 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10039993 [exp] 51 / 2e-07 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [poplar] [flax] PFK PF00365 [poplar] [flax] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Potri.006G281900.1 pacid=42767645 polypeptide=Potri.006G281900.1.p locus=Potri.006G281900 ID=Potri.006G281900.1.v4.1 annot-version=v4.1 ATGGCTCCTCCTTCTGTAATCAATGGCGCCGTCGCCGCCTCTTCCGGCAACTCCGCTCCAGCCAGTGGACGCGTCGCTTCCGTTTATAGCGAAGTTCAAT CTAGCCGCATTGATCACGCTCTCCCTCTCCCTTCTGTCCTCCAGAACCCTTTCCAAATCGTCGACGGTCCTCCTAGCTCCGCTGCCGGCAATCCTGATGA GATAGCGAAGCTGTTTCCGAATATGTTTGGGCAGCCATCAGCAATGTTGGTGCCAAACAATGTGGATACTTTGAGCTCAGATCAGAAGTTGAGGATTGGT GTCGTTTTGTCCGGTGGACAAGCACCTGGTGGCCATAATGTTATTTCTGGAATCTACGATTATTTGCAGGATCGGGCGAAAGGAAGTGTGTTGTATGGAT TTAGGGGAGGTCCGGCTGGGATCATGAAGTGCAAATATGTTGAATTGAATGCTGATTATATCTATCCTTACAGAAACCAGGGTGGTTTCGATATGATTGC CAGTGGAAGAGACAAGATTGAATCACCTGAGCAGTTTAAACAAGCCGAAGAAACAGCTAAGAAACTTGACTTGGATGGGCTTGTTGTTATTGGTGGGGAT GACTCAAACACAAATGCTTGCCTCCTTGCTGAAAACTTCAGGGGTAAAAATTTGAAAACTCGGGTGATTGGATGCCCAAAAACCATTGATGGTGATTTGA AATGCAAGGAGGTTCCTACCAGTTTTGGATTTGATACTGCTTGCAAGATATATGCAGAAATGATTGGAAATGTCATGGTTGATGCTCGATCAACTGGAAA ATATTATCACTTTGTCCGGCTTATGGGACGTGCAGCTTCTCACATTACATTGGAGTGTGCCTTGCAAACTCATCCGAACATCACCATCATTGGAGAAGAG GTTGCTGCTAAGAAACTGACGCTGAAAAATGTTACAGATTACATAGTAAATGTAATCTGTAAACGTTCTGATCTTGGATATAATTATGGTGTGATTCTTA TTCCTGAAGGTTTAATTGATTTCATTCCTGAGGTTCAGCAGCTTATAGCAGAACTGAATGAGGTTTTGGCCCATGATGTCGTAGATGAAGGTGGGCAATG GAAAAAGAAACTCACAAATCAATCTCTGCAGCTTTTTGATTTTTTACCACCAGCAATTCAAGAACAATTGATGCTTGAAAGAGATCCACATGGAAATGTC CAGGTTGCCAAAATTGAGACCGAGAAAATGCTTATTCAAATGGTTGAGACTGAGTTGGAGAAGAGGAAGCAAGAAGGTTCATACAAAGGCCATTTCAAAG GACAGTCCCACTTCTTCGGGTATGAAGGAAGATGTGGTTTGCCTACAAACTTTGATTCTACATACTGCTATGCTTTGGGCTATGGTGCAGGAGCTCTCCT TCACAGTGGAAAAACTGGGTTGATATCATCAGTTGGGAATTTGGGTGCTCCTGTTGCAGAATGGACAGTTGGAGGGACGGCATTGACTTCTTTGATGGAT GTGGAAAGGAGACATGGTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTAGAGCTTGAAGGTGCACCTTTCAAAAAATTTGCATCCCTGAGGGATGAGT GGGCACTTAAGAATCGGTACATCAGTCCTGGTCCCATCCAATTCATGGGCCCAGGATCAGATGCCATTAGCCACACTTTACTATTGGAATTGGGAGCTGA TGCTTAG
AA sequence Show only first row Show all	>Potri.006G281900.1 pacid=42767645 polypeptide=Potri.006G281900.1.p locus=Potri.006G281900 ID=Potri.006G281900.1.v4.1 annot-version=v4.1 MAPPSVINGAVAASSGNSAPASGRVASVYSEVQSSRIDHALPLPSVLQNPFQIVDGPPSSAAGNPDEIAKLFPNMFGQPSAMLVPNNVDTLSSDQKLRIG VVLSGGQAPGGHNVISGIYDYLQDRAKGSVLYGFRGGPAGIMKCKYVELNADYIYPYRNQGGFDMIASGRDKIESPEQFKQAEETAKKLDLDGLVVIGGD DSNTNACLLAENFRGKNLKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEE VAAKKLTLKNVTDYIVNVICKRSDLGYNYGVILIPEGLIDFIPEVQQLIAELNEVLAHDVVDEGGQWKKKLTNQSLQLFDFLPPAIQEQLMLERDPHGNV QVAKIETEKMLIQMVETELEKRKQEGSYKGHFKGQSHFFGYEGRCGLPTNFDSTYCYALGYGAGALLHSGKTGLISSVGNLGAPVAEWTVGGTALTSLMD VERRHGKFKPVIKKAMVELEGAPFKKFASLRDEWALKNRYISPGPIQFMGPGSDAISHTLLLELGADA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12000			Phosphofructokinase family pro...		Potri.006G281900 [exp]	0	1
AT1G12000			Phosphofructokinase family pro...		Potri.011G015900 [exp]	1.00	0.9884
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.009G067100 [exp]	2.00	0.9624
AT2G35020		GlcNAc1pUT2	N-acetylglucosamine-1-phosphat...		Potri.003G074700 [exp]	3.00	0.9564
AT2G35120			Single hybrid motif superfamil...		Potri.015G122500 [exp]	3.16	0.9541
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.001G142100 [exp]	4.00	0.9560	UBP20.2
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Potri.005G227400 [exp]	5.29	0.9459
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.017G029000 [exp]	5.29	0.9528
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Potri.001G022700 [exp]	6.00	0.9470	ABI8.2
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.010G013500 [exp]	6.32	0.9480
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.006G136700 [exp]	6.92	0.9508	Pt-SUS1.1

Compare expression of checked genes

Potri.006G281900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.