Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40100 57 / 2e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63880 56 / 6e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G64070 55 / 1e-07 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 55 / 1e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G14370 54 / 2e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19530 53 / 4e-07 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38850 53 / 4e-07 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G49140 52 / 9e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 51 / 1e-06 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44870 51 / 2e-06 TTR1, LAZ5 tolerance to Tobacco ringspot virus 1, LAZARUS 5, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G282300 [exp] 906 / 0 AT5G36930 413 / 3e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008292 [exp] 542 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012750 [exp] 534 / 0 AT5G36930 195 / 3e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G283700 [exp] 521 / 0 AT5G40100 66 / 2e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.006G282800 [exp] 516 / 0 AT5G40100 67 / 2e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.006G269900 [exp] 517 / 1e-177 AT5G36930 284 / 2e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G077260 [exp] 513 / 3e-177 AT5G36930 195 / 8e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G270000 [exp] 523 / 7e-176 AT5G36930 496 / 1e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009251 [exp] 521 / 3e-175 AT5G36930 508 / 1e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 62 / 5e-10 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10003749 [exp] 53 / 5e-07 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011741 [exp] 52 / 8e-07 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042753 [exp] 45 / 8e-05 AT4G12010 121 / 3e-30 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029722 [exp] 45 / 0.0001 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018021 [exp] 44 / 0.0003 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10030839 [exp] 43 / 0.0005 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015649 [exp] 41 / 0.0007 AT1G69550 75 / 1e-15 disease resistance protein (TIR-NBS-LRR class) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G283100.1 pacid=42768462 polypeptide=Potri.006G283100.1.p locus=Potri.006G283100 ID=Potri.006G283100.1.v4.1 annot-version=v4.1 ATGGAGCTTCCAGAAGAAATGAGTAGATTGAATTCACTTCAAGAGCTGGTTTTAGGTGGTTGCTCAAATCTTGACAGCTTGAATATGGAGTTAGAGCATC ATCAGTGGCGCAGCTTGCTTCAAAGCGATGAAATTGTTGCAAGTACATCACACATTACATCTCTTCCATTGAAGCTATTCTTTCCCTCTAGGTTTTCAGC GAGGAAAATATTGAGATTTACGTTGTTTTCGCTGCCACGCTCCTTGACGAGACTAGATTTAAGTGGAACTCCAATTCGTTTTCTTCCAGAAAGCATCAAG GATCTTGGTCCACTCAGACATCTATATTTAAGAAATTGCAAAATGCTTCAGGCACTCCTAGAGCTTCCATCCCATTTGTGGTCGTTAGATGTGTCCTTTT GCTATTCACTGCAAAGACCTGCAAATCCAAACAGTTCGAATAAAGCAGATGGTTGTGATCAATTTGTCGAGTTCCAAGATTGGATAAAGCAAGAATTAAT CCAAACGTTTGACTCACACGTGTTCAGAATAATGGAAACGGTTTGTGCTCAAATACAGCCATCGAGATTTCAGATGACATTTGTATATGGCAAATTCAAC TTTGTCAACTTTGTATTTGATGAAGATGAGATGTTAAGGAGGTTTCATGAAGAGGAAGAAGAGGATAAATGGCTAATTCAGAATGAGTTTACAGATAACT TTTCATTCAAAATATCCTCACCTCCTGCGCACCGGATATGTGGCTTTAATCTGTTCACAAGGTTTAGTGTGACGTCAGAGTACAGTTGCCATGAAGAAGT TGGTATTGGAATCAGAAACAATATCAGTGGTCAATCCTTGAGTCGTCAAGGGGTCTTCCCTGCGTGTAACATGCGGAGGTTTCGTGAAATCCAATCGCTA AGCCACTGGAAATTAGGGGCCAATGATCCTACATTTGATAATGGTGATGACGTGAGTATTTCAGTGCTTCCACATGATCCATCGCTAAGCAACTGGATTT TCGCCACATATGATAACGGTGATGACATGAGTATTTCAGTGCTTCAACATGAGCCAGCTATTCAAATAAGGACGATTGGTATCCAATGGTTGCATGAAGA GGAAGGAAATGATAATGATATCCAATCAAAGAATGAAGATATCACATCCCATTGCAGCAGCTCATCAAACAGTGAAGTTATCAATGCCCACAACAGTAGC GATGAAGATGACGTACTCAAAGTAGGAATAGCTTCTCATATTTTTAGAAATTATTATTGCCTTTCCCATTATAATCATGATGCCATGGAAGCAAGGATGT GGACTTTTGAAAAGAAAGTTCCAGAGGCAATAGAACAATGA
AA sequence Show only first row Show all	>Potri.006G283100.1 pacid=42768462 polypeptide=Potri.006G283100.1.p locus=Potri.006G283100 ID=Potri.006G283100.1.v4.1 annot-version=v4.1 MELPEEMSRLNSLQELVLGGCSNLDSLNMELEHHQWRSLLQSDEIVASTSHITSLPLKLFFPSRFSARKILRFTLFSLPRSLTRLDLSGTPIRFLPESIK DLGPLRHLYLRNCKMLQALLELPSHLWSLDVSFCYSLQRPANPNSSNKADGCDQFVEFQDWIKQELIQTFDSHVFRIMETVCAQIQPSRFQMTFVYGKFN FVNFVFDEDEMLRRFHEEEEEDKWLIQNEFTDNFSFKISSPPAHRICGFNLFTRFSVTSEYSCHEEVGIGIRNNISGQSLSRQGVFPACNMRRFREIQSL SHWKLGANDPTFDNGDDVSISVLPHDPSLSNWIFATYDNGDDMSISVLQHEPAIQIRTIGIQWLHEEEGNDNDIQSKNEDITSHCSSSSNSEVINAHNSS DEDDVLKVGIASHIFRNYYCLSHYNHDAMEARMWTFEKKVPEAIEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40100			Disease resistance protein (TI...		Potri.006G283100 [exp]	0	1
AT2G18630			Protein of unknown function (D...		Potri.005G127401 [exp]	1.41	0.7800
AT1G70740			Protein kinase superfamily pro...		Potri.010G109700 [exp]	2.23	0.7336
AT5G36930			Disease resistance protein (TI...		Potri.011G013700 [exp]	6.70	0.7713
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G033900 [exp]	7.74	0.7047
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015600 [exp]	8.83	0.7291
AT5G36930			Disease resistance protein (TI...		Potri.011G077260 [exp]	9.27	0.7776
AT2G37370			unknown protein		Potri.016G080900 [exp]	23.06	0.7059
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Potri.014G029100 [exp]	24.65	0.6500
AT1G20823			RING/U-box superfamily protein...		Potri.007G064401 [exp]	26.92	0.6889
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.018G149700 [exp]	26.94	0.6932

Compare expression of checked genes

Potri.006G283100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.