Plant FIBer expression Database

Potri.006G283300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22190 184 / 1e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G282500
[exp]
369 / 1e-128 AT4G22190 207 / 9e-64 unknown protein
Potri.006G282000
[exp]
356 / 2e-123 AT4G22190 206 / 2e-63 unknown protein
Potri.011G015500
[exp]
338 / 1e-116 AT4G22190 201 / 2e-61 unknown protein
Potri.004G003900
[exp]
318 / 2e-108 AT4G22190 176 / 1e-51 unknown protein
Potri.006G270100
[exp]
254 / 3e-84 AT4G22190 154 / 8e-44 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G283300.1 pacid=42770005 polypeptide=Potri.006G283300.1.p locus=Potri.006G283300 ID=Potri.006G283300.1.v4.1 annot-version=v4.1
ATGGTCCAAAACGCATCTTTCCCTCAACCAAATCTTGTTACAGCTAATGAACTCTTTGTTGATGGTGTCCTCCTCCCTCTCTACCTCCTCCACCACCCCA
ACAACAACAACAACAACCACCCGCCTGATCCTGATCCTGACTCAACCGAACCCGAACCTCCCAGCTCCCAACCTGACCCTGAACCCGAAATCTTGCCAGC
AAGCATAACAATGGAGCCAACAAGCAGTTCCAAGAGATGGAAAGATATAATATTCAAGAAAGGTGACAAGAAAACTTCAACAGCTGCCAAGAAACAAGAA
GAGAAAGATAAGGACAAGGACAAGGACAAAAAGAGAGAGAAAAGGAGTCAAAATGGAGCGAGTTCAGCTGAGTTGAATATCAACATATGGCCATTTTCAC
GTAGTAGATCCGAAGGGAACAGTGTGACCCGACCCAAGTTGTTTCCCGGGGCTCCCGGAACCCGGAAGGTAAGTAGTGCCCCTTGTTCGAGGAGTAATTC
AGCAGGGGAATCCAAATCAAGAAAGTCATGGCCAAGTAGCCCGGGTCGACCAGGAGTCCATTTGATTCGGAGCAGCCCAGTGTGGCAGGTTCGACGTGGA
GGTGGTACGGGTACGAAGAGTAGCTTCCCTGAGCCTGTGGTTCGGAGTGGTGAGAAATCGAGCGGTGCTAGAGCAAAGGTTTTGAATATAAATGTCCCCG
TTTGTATCGGGTATAGAAATCATTTGAGTTGCAGAAGCGGCACTACTAATGTTGGAAATGGTGGTAGTCTTTTCAATTTACGTAGCCTCTTCACAAAAAA
AGTTTATTAG
AA sequence
>Potri.006G283300.1 pacid=42770005 polypeptide=Potri.006G283300.1.p locus=Potri.006G283300 ID=Potri.006G283300.1.v4.1 annot-version=v4.1
MVQNASFPQPNLVTANELFVDGVLLPLYLLHHPNNNNNNHPPDPDPDSTEPEPPSSQPDPEPEILPASITMEPTSSSKRWKDIIFKKGDKKTSTAAKKQE
EKDKDKDKDKKREKRSQNGASSAELNINIWPFSRSRSEGNSVTRPKLFPGAPGTRKVSSAPCSRSNSAGESKSRKSWPSSPGRPGVHLIRSSPVWQVRRG
GGTGTKSSFPEPVVRSGEKSSGARAKVLNINVPVCIGYRNHLSCRSGTTNVGNGGSLFNLRSLFTKKVY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G22190 unknown protein Potri.006G283300
[exp]
0 1
AT4G22190 unknown protein Potri.006G282500
[exp]
1.00 0.9682
AT5G15350 AtENODL17 early nodulin-like protein 17 ... Potri.004G121100
[exp]
2.44 0.9451
AT4G22190 unknown protein Potri.006G270100
[exp]
3.00 0.9224
AT3G20820 Leucine-rich repeat (LRR) fami... Potri.001G269800
[exp]
4.00 0.9123
AT1G62440 LRX2 leucine-rich repeat/extensin 2... Potri.006G081200
[exp]
4.89 0.9216
AT1G05370 Sec14p-like phosphatidylinosit... Potri.010G088300
[exp]
8.83 0.9179
AT3G44610 Protein kinase superfamily pro... Potri.008G024000
[exp]
10.00 0.9193
AT1G77110 PIN6 PIN-FORMED 6, Auxin efflux car... Potri.002G072200
[exp]
10.24 0.9074
AT1G20070 unknown protein Potri.005G241800
[exp]
15.16 0.9093
AT1G20180 Protein of unknown function (D... Potri.002G018200
[exp]
16.61 0.8689

Potri.006G283300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.