Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 140 / 1e-35 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 118 / 3e-28 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G16870 116 / 1e-27 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27170 116 / 1e-27 transmembrane receptors;ATP binding (.1.2) AT5G38340 115 / 3e-27 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63750 110 / 8e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G14370 105 / 5e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G65850 104 / 9e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G63860 104 / 9e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G63870 103 / 2e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G008612 [exp] 668 / 0 AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G015400 [exp] 665 / 0 AT5G36930 438 / 1e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013450 [exp] 660 / 0 AT5G36930 422 / 2e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012750 [exp] 659 / 0 AT5G36930 195 / 3e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013900 [exp] 657 / 0 AT5G36930 441 / 1e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G011600 [exp] 652 / 0 AT5G36930 492 / 1e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G282200 [exp] 649 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G269900 [exp] 647 / 0 AT5G36930 284 / 2e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G270000 [exp] 646 / 0 AT5G36930 496 / 1e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 204 / 2e-57 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 187 / 1e-51 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 171 / 3e-46 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 127 / 5e-31 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 125 / 1e-30 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 112 / 3e-26 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 109 / 2e-25 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011104 [exp] 103 / 3e-23 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10019708 [exp] 96 / 6e-21 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 94 / 2e-20 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G283600.1 pacid=42770288 polypeptide=Potri.006G283600.1.p locus=Potri.006G283600 ID=Potri.006G283600.1.v4.1 annot-version=v4.1 ATGCACAACAAATTATGCAAAAGTTGTTGTACTGATTCAATGGTAAGCCGAAAGCGCCACATGCTTAACTTCTTTCAACAATGGCTTTCTGATTTTTCCG ATGGGGGAAAATTACAAACAAGTTTGTTTCCTATCCTCAGCACGGATGCTTTTAGAAAGATGACAGATGTAAAATTTCTCCAACTAAACTACACTAATTT TCATGGAAGTTTTGAGCGCTTTCCCAAGAATTTGATATGGTTATGTTGGCATGGATTGTCTTCGAGATCCATACCAAATCACGTATGCTTGGAGAAGCTT GTGGTTCTTGATCTATCCAGAAGTTGTATAGTTGATGCTTGGAAAGGCAAACTGTTTCTTCCAAAATTAAAAGTTCTTGATCTCCGTCACTCTCGTGATC TCATTAGAACCCCTGACTTCTCGGGTCTCCCAGCCCATGAAAAGCTAATACTTGAAGACTGCGTCCGTTTGGTTCAAATTCACAATTCTATTGGTGATTT ACAAAAACTGTTGATCTTAAATCTAAGAAATTGTACAAGTCTTATGGAGCTTCCAGAAGAATTGAGTAGATTCAATTCACTTCAAGAGCTGGTTTTAGAT GGTTGCTCAAATCTTGACAGCATGAATATGGAGTTAGAGCATCATCAAGGGCGCAAGTTGCTTCAAAGTGATGGAATTGTTGCAAGTGCATCATACATTA CATCTCTTCCGTTGAAGCTATTCTTTCCCTCTAGGTTTTCAGCGAGGAAAATGTTGAGATTTACCTTGTTTTCACTGCCACGCTTCTTGGAGAGTCTAGA TTTAAGTGGAACTCCAATTCGTTTTTTTCCAGAAAGCATCAAGGATCTTGGTCTGCTCAGAGTTTTGATTTTAAGAAATTGCAAAATGCTTCAGGCACTC CCAGAGCTTCCATCCCATTTGGATTCGTTAGATGTGTCCTTTTGCTATTCACTGCAAAGCCTTGCAAATCGACACCGTTGGATTTTAGCAGATGGTTGTG ATCACTTAGCCGAGTTCCAAGATCGGATAAAGCAAGAATTAATCCAAAAGTTTGACTCTCACATGTTCAGAATAATGGAAACGGTTTGTGCTCAAATACA GACATCGAGATTTGAGGTATTATTTGATCATGGCAAATTCAACGTATATGTATTTGATGAAGATGAGGAGTTAAGGGTGTTTTATGAGGAGGAAGAAGAG GATAAATGGCTAATTCAGAATGAGTTTGTAGATATAACTTTTCATTCAAAATATCCTCACCTGGGACGCTCCGGATATGTGGATTTAATTTGTTCACAAG GTGTTGTATGA
AA sequence Show only first row Show all	>Potri.006G283600.1 pacid=42770288 polypeptide=Potri.006G283600.1.p locus=Potri.006G283600 ID=Potri.006G283600.1.v4.1 annot-version=v4.1 MHNKLCKSCCTDSMVSRKRHMLNFFQQWLSDFSDGGKLQTSLFPILSTDAFRKMTDVKFLQLNYTNFHGSFERFPKNLIWLCWHGLSSRSIPNHVCLEKL VVLDLSRSCIVDAWKGKLFLPKLKVLDLRHSRDLIRTPDFSGLPAHEKLILEDCVRLVQIHNSIGDLQKLLILNLRNCTSLMELPEELSRFNSLQELVLD GCSNLDSMNMELEHHQGRKLLQSDGIVASASYITSLPLKLFFPSRFSARKMLRFTLFSLPRFLESLDLSGTPIRFFPESIKDLGLLRVLILRNCKMLQAL PELPSHLDSLDVSFCYSLQSLANRHRWILADGCDHLAEFQDRIKQELIQKFDSHMFRIMETVCAQIQTSRFEVLFDHGKFNVYVFDEDEELRVFYEEEEE DKWLIQNEFVDITFHSKYPHLGRSGYVDLICSQGVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.006G283600 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.011G009400 [exp]	1.41	0.9571
AT5G36930			Disease resistance protein (TI...		Potri.019G021024 [exp]	1.41	0.9613
AT4G02550			unknown protein		Potri.015G008050 [exp]	2.44	0.9520
					Potri.017G020864 [exp]	3.16	0.9357
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200080 [exp]	4.89	0.9510
AT4G02550			unknown protein		Potri.009G022650 [exp]	5.19	0.9383
AT4G02550			unknown protein		Potri.003G047151 [exp]	6.16	0.9221
AT3G14470			NB-ARC domain-containing disea...		Potri.017G014900 [exp]	6.32	0.9389
AT4G02550			unknown protein		Potri.011G163248 [exp]	9.53	0.9290
AT5G36930			Disease resistance protein (TI...		Potri.019G017082 [exp]	9.79	0.9309

Compare expression of checked genes

Potri.006G283600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.