Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56520 46 / 5e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G63860 44 / 0.0002 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72840 44 / 0.0002 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G17050 43 / 0.0003 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G49140 42 / 0.001 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G283000 [exp] 728 / 0 AT5G36930 460 / 8e-143 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G282600 [exp] 669 / 0 AT5G36930 466 / 1e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012750 [exp] 605 / 0 AT5G36930 195 / 3e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008612 [exp] 561 / 0 AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G270000 [exp] 558 / 0 AT5G36930 496 / 1e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G269900 [exp] 556 / 0 AT5G36930 284 / 2e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G011600 [exp] 545 / 0 AT5G36930 492 / 1e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013900 [exp] 540 / 0 AT5G36930 441 / 1e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G282800 [exp] 509 / 0 AT5G40100 67 / 2e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 69 / 3e-12 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 68 / 4e-12 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10028043 [exp] 48 / 1e-05 AT5G17680 59 / 4e-09 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10042753 [exp] 43 / 0.0002 AT4G12010 121 / 3e-30 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10030839 [exp] 42 / 0.0007 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G284000.1 pacid=42768243 polypeptide=Potri.006G284000.1.p locus=Potri.006G284000 ID=Potri.006G284000.1.v4.1 annot-version=v4.1 ATGGAGTTAGAGCATCATCAAGGGCGCAAGTTGCTTCAAAGTGATGGAATTGTTGCAAGTACATCATTCATTTCATCTCTTCCATTGAAGCTATTCTTTC CCTCTAGGTTTTCAACGAGGAAAATGTTGAGATTTACCTCGTTTTCACTGCCACGCTTCTTGGAGAGTCTAGATTTAAGTGGAACTCCAATTTGTTTTCT TCCAGAAAGCATCAAGGATCTTGGTCTACTCAGACATCTATATTTAATAAATTGCAAGATGCTTCAGGCACTCACAGAGTTTCCATCCCATTTGGATTCG TTAGATGTGTCCTTTTGCTATTCACTGCCAAGATATGAAAATCTAAATAGTTGGACTGAAAAAGATGGTTGTGCTCACTTAGTCGAGTTCCAAGATGGGA TAAAGCAAGAATTAATCCAAAAGTTTGACTCTCACGTGTTCAGAATAATGGAAACGATTAGTGCTCAAATACAGACATCGAGTTTTCAGATAACATTTAT GGATGGCATATTCAACGTTGCCGTATCTGTATTTGATGAAGATGAGATGTTAAGGAGGTTTTGTGCAGAGGGAGAAGAGGATAAATGGCTAATTCAGAAT GAGTTTGTAGATAACTTTTCATTCAAAATATCCTCACCTCCTCCTGCGCACCGGATATGTGGCTTTAATCTGTTTATAAGTTGTGTGACGTCAGCATACC GTGGCTTTAGGAATGTTTATATTGAAATCAGAAACAATACCAGTGGCCAGTCCTTGCGTCGTCAGGTCCATGTCTTAGATATGCGTTTCGATGATGAGGT TCGTGCAAGCCAATCGCTAAGCCACTGGAAATTAGGGGGCGATGATCCTACATTTGATAGTGGTGATGACGTGACAATTTCAATGGTTGTCACGTCAGCT AGTCAAATAAGGACCGTTGGTGTACAATGGTTGCATGAAGAGGAAGGAAAGGATGATGATTTTATCCAATCAAAGGATGGAGTTATCAATGCCCACAACA GTAGCGATGATGATGATGATGCAGCACACGTAGCCAAAGTAGAAATAGCTTCTCGTATTTTTAGAAATTATTATTGTGCTTTCCATGGTAAATACAGTGC TCGCAATTTCACTTATTGGAATTTTGCAAAGAAGGGTGTATAA
AA sequence Show only first row Show all	>Potri.006G284000.1 pacid=42768243 polypeptide=Potri.006G284000.1.p locus=Potri.006G284000 ID=Potri.006G284000.1.v4.1 annot-version=v4.1 MELEHHQGRKLLQSDGIVASTSFISSLPLKLFFPSRFSTRKMLRFTSFSLPRFLESLDLSGTPICFLPESIKDLGLLRHLYLINCKMLQALTEFPSHLDS LDVSFCYSLPRYENLNSWTEKDGCAHLVEFQDGIKQELIQKFDSHVFRIMETISAQIQTSSFQITFMDGIFNVAVSVFDEDEMLRRFCAEGEEDKWLIQN EFVDNFSFKISSPPPAHRICGFNLFISCVTSAYRGFRNVYIEIRNNTSGQSLRRQVHVLDMRFDDEVRASQSLSHWKLGGDDPTFDSGDDVTISMVVTSA SQIRTVGVQWLHEEEGKDDDFIQSKDGVINAHNSSDDDDDAAHVAKVEIASRIFRNYYCAFHGKYSARNFTYWNFAKKGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64070		RLM1	RESISTANCE TO LEPTOSPHAERIA MA...		Potri.006G284000 [exp]	0	1
AT3G43630			Vacuolar iron transporter (VIT...		Potri.002G069400 [exp]	6.48	0.9103
AT3G28960			Transmembrane amino acid trans...		Potri.008G086500 [exp]	6.48	0.9287
AT1G19010			unknown protein		Potri.017G074300 [exp]	7.74	0.8926
AT3G47570			Leucine-rich repeat protein ki...		Potri.010G228300 [exp]	8.77	0.8967
					Potri.013G007900 [exp]	10.00	0.9199
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.010G043500 [exp]	10.19	0.8835
					Potri.016G098300 [exp]	12.04	0.9190
AT3G22740		HMT3	homocysteine S-methyltransfera...		Potri.008G155900 [exp]	12.32	0.8883	HMT3.1
AT1G16770			unknown protein		Potri.014G003300 [exp]	14.38	0.8854
AT3G53980			Bifunctional inhibitor/lipid-t...		Potri.016G104300 [exp]	16.73	0.9006

Compare expression of checked genes

Potri.006G284000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.