Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TOM40.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20000 482 / 4e-173 TOM40 translocase of the outer mitochondrial membrane 40 (.1) AT1G50400 413 / 4e-146 Eukaryotic porin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G004100 [exp] 644 / 0 AT3G20000 480 / 1e-172 translocase of the outer mitochondrial membrane 40 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017368 [exp] 532 / 0 AT3G20000 457 / 2e-163 translocase of the outer mitochondrial membrane 40 (.1) Lus10010163 [exp] 528 / 0 AT3G20000 455 / 1e-162 translocase of the outer mitochondrial membrane 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [poplar] [flax] MBB PF01459 [poplar] [flax] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Potri.007G000200.1 pacid=42765390 polypeptide=Potri.007G000200.1.p locus=Potri.007G000200 ID=Potri.007G000200.1.v4.1 annot-version=v4.1 ATGGCGGGGTTTGTACCTCCAGGTACAACGTTGTTAGGCAATGAAGCAACATCTGCAGCAGCCAAAAAGGTCAATGAAGTGCACAAAAACGTTGATTACA TGAACCTTCCTTGTCCAATTCCATACGAAGAACTCCATCGTGAAGCACTCATGTCTTTAAAGCCTGAATATTTTGAGGGGATGCGTTTTGATTTTACCAA AGGACTGAATCAGAAATTTTCACTGAGTCACAGTGTAATGATGGGGCCAATGGAAATTCCTTCTCAATCTTCGGAAGCCATCAAAATCCCGACTGCTCAC TACGAGTTTGGTGCTAACTTTATAGACCAAAGGACAATGCTTATTGGGAGGGTGTTGACTGATGGGAGACTAAATGCAAGAGTGAAGTGTGATTTGACTG ATGATCTTGCCTTGAAGGCTAATGCTCAGCTCACAAACGAGCCTCACATGTCTCATGTCATGTTGAACTTTGATTACAAGGGTAAAGACTACAGGAGCCA GTTGCAACTAGGAAATGGTGCCTTATTTGGTGCCAGTTACATTCAGAGTGTGACCCCTCACTTGTCCTTGGGTGCTGAAGTATTTTGGGCTGGTCAACAT CGGAAGTCTGGTGTTGGATATGCTGGTCGGTACGAGACAGACAAGATGGTTGCTGCAGGGCAAGTTGCTAGCACTGGATTGATGGCTTTGAGCTATGTGC AGAAGGTTTCTGAGAAGGTTTCACTAGCAACAGACTTCATGTACAACTACTTATCAAGAGATGTGACAGTTAGTGTTGGCTATGATTATGCCCTCAGACA AGCTCGTCTGAGAGGAAAGATTGATTCCAATGGGTGCACTTCTGCCTTCTTGGAAGAACGCTTGAATATGGGTCTCAATTTTATTCTTTCTGCAGAGTTG GATCATAAGAAAAAGGATTACAAATTTGGATTTGGGTTGACAGTGGGCTAA
AA sequence Show only first row Show all	>Potri.007G000200.1 pacid=42765390 polypeptide=Potri.007G000200.1.p locus=Potri.007G000200 ID=Potri.007G000200.1.v4.1 annot-version=v4.1 MAGFVPPGTTLLGNEATSAAAKKVNEVHKNVDYMNLPCPIPYEELHREALMSLKPEYFEGMRFDFTKGLNQKFSLSHSVMMGPMEIPSQSSEAIKIPTAH YEFGANFIDQRTMLIGRVLTDGRLNARVKCDLTDDLALKANAQLTNEPHMSHVMLNFDYKGKDYRSQLQLGNGALFGASYIQSVTPHLSLGAEVFWAGQH RKSGVGYAGRYETDKMVAAGQVASTGLMALSYVQKVSEKVSLATDFMYNYLSRDVTVSVGYDYALRQARLRGKIDSNGCTSAFLEERLNMGLNFILSAEL DHKKKDYKFGFGLTVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20000		TOM40	translocase of the outer mitoc...		Potri.007G000200 [exp]	0	1	Pt-TOM40.1
AT4G11630			Ribosomal protein L19 family p...		Potri.012G086800 [exp]	1.73	0.9164
AT2G40010			Ribosomal protein L10 family p...		Potri.008G066300 [exp]	3.16	0.9220
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G051500 [exp]	4.47	0.9026
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.017G065800 [exp]	6.00	0.9013	PHB3.1
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Potri.017G014500 [exp]	7.61	0.8861
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.012G139400 [exp]	7.87	0.9188
AT5G14800		EMB2772, AT-P5C...	EMBRYO DEFECTIVE 2772, pyrroli...		Potri.006G042600 [exp]	9.48	0.8938
AT4G02930			GTP binding Elongation factor ...		Potri.014G138100 [exp]	10.24	0.8991	TUFA.4
AT2G31725			Eukaryotic protein of unknown ...		Potri.013G127400 [exp]	11.31	0.9070
AT1G16740			Ribosomal protein L20 (.1)		Potri.017G119300 [exp]	11.40	0.9011

Compare expression of checked genes

Potri.007G000200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.