Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20020 582 / 0 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT2G19670 239 / 1e-75 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT4G29510 236 / 3e-74 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT1G04870 196 / 7e-59 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT3G12270 199 / 1e-57 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT3G06930 160 / 4e-44 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT5G49020 160 / 5e-44 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G004000 [exp] 385 / 3e-135 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.006G149400 [exp] 235 / 1e-73 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 226 / 3e-70 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G071200 [exp] 197 / 4e-59 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.001G030200 [exp] 171 / 4e-47 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.010G014600 [exp] 157 / 1e-42 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.008G222700 [exp] 153 / 3e-41 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017367 [exp] 619 / 0 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10010162 [exp] 600 / 0 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10000982 [exp] 228 / 8e-71 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10040546 [exp] 227 / 2e-70 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10008577 [exp] 206 / 2e-61 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10019439 [exp] 183 / 1e-53 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10043295 [exp] 182 / 1e-53 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10008664 [exp] 174 / 1e-48 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10026158 [exp] 174 / 1e-48 AT3G12270 613 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10034172 [exp] 158 / 5e-43 AT5G49020 743 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF06325 [poplar] [flax] PrmA Ribosomal protein L11 methyltransferase (PrmA)
Representative CDS sequence Show only first row Show all	>Potri.007G000300.1 pacid=42765883 polypeptide=Potri.007G000300.1.p locus=Potri.007G000300 ID=Potri.007G000300.1.v4.1 annot-version=v4.1 ATGTACTCAAGTTCAGGTGACAGTAACGGATACCACCAAGACAACAAGCAGCAACTCGGGATGAGTCAAAGAGACCGAGTTAGAAGAGTACGCGCCAAGT CACGTGATGGATATGGTGAGGAACAAAAGGTCACTCCTTGTACCGAGTTTGACAAGGCTTACTTTAACTCTTATGCTCATGTTGGTATCCATGAAGAGAT GATTAAGGATCATGTGCGGACAAACACTTATAGGGATGCAATCTTTCACCATCAGAGTTTGATTGAAGGCAAGGTTGTCGTGGATGTTGGTTGTGGCACT GGAATTCTTTCTATTTTTTGTGCTCAGGCTGGTGCAAAACGGGTATATGCAGTTGATGCAAGTGATATTGCTGTGCAGGCAAATGAAGTTGTGAAGGCGA ACAATTTATCAGACAAGGTCATTGTATTACATGGACGAGTTGAGGATGTTGAAATTGATGAGGAGGTTGATGTAATAATTTCAGAATGGATGGGCTACAT GCTTTTGTATGAGAGCATGCTGGGAAGTGTCATCACTGCCAGAGATCGCTGGCTAAAGCATGGAGGCCTTATTCTTCCTTCAAATGCAACTTTGTACATG GCACCTGTCACACATCCAGACAGATACCGTGAAAGCATTGAGTTTTGGCGAAATGTTTATGGAATCGATATGTCTGCCATGTTGCCCTTAGCAAAACAGT GTGCATTTGAAGAGCCGTCTGTGGAAACAATATCAGGTGAAAATGTATTGACATGGCCACATGTGGTTAAGCATGTGGATTGCTATACGATTACAATTGA TGAACTAGAATCTGTCACAACGACATACAAATTCAGGTCAATGATGAGAGCTCCATTTCATGGGTTTGCGTTTTGGTTCGACGTTGAATTTGGTGGGCCT GCAGCTTCTCCGATCAATCCTCGAGCACCAGTCCTACCAACTGCACCATCAAACAATTCTCCAATGGATGGTAGTCAGAGGAAGAAAAGGACAAATCCAA ATGAGGCACTTGTGCTATCCACTGCACCCGAGGACCCTCCAACACATTGGCAACAGACTTTGATATACTTCTACGACCCAATAGATGTGGAGCAAGATCA ACTCATTGAAGGCTCAGCAACACTAACACAAAGCAAAGAAAACCGTCGATTCATGAATATTAACCTACGATACTCTTCTGGCGGGCGGTCCTTTGTAAAG GAGTCTGTGATGAGGTGA
AA sequence Show only first row Show all	>Potri.007G000300.1 pacid=42765883 polypeptide=Potri.007G000300.1.p locus=Potri.007G000300 ID=Potri.007G000300.1.v4.1 annot-version=v4.1 MYSSSGDSNGYHQDNKQQLGMSQRDRVRRVRAKSRDGYGEEQKVTPCTEFDKAYFNSYAHVGIHEEMIKDHVRTNTYRDAIFHHQSLIEGKVVVDVGCGT GILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLSDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKHGGLILPSNATLYM APVTHPDRYRESIEFWRNVYGIDMSAMLPLAKQCAFEEPSVETISGENVLTWPHVVKHVDCYTITIDELESVTTTYKFRSMMRAPFHGFAFWFDVEFGGP AASPINPRAPVLPTAPSNNSPMDGSQRKKRTNPNEALVLSTAPEDPPTHWQQTLIYFYDPIDVEQDQLIEGSATLTQSKENRRFMNINLRYSSGGRSFVK ESVMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Potri.007G000300 [exp]	0	1
AT1G13750			Purple acid phosphatases super...		Potri.010G158400 [exp]	4.89	0.8107
AT1G14710			hydroxyproline-rich glycoprote...		Potri.010G102100 [exp]	5.47	0.8444
AT5G18610			Protein kinase superfamily pro...		Potri.008G046500 [exp]	8.83	0.7996	Pt-PNPK2.2
AT2G25220			Protein kinase superfamily pro...		Potri.018G022300 [exp]	12.56	0.8346
AT1G77720		PPK1	putative protein kinase 1 (.1)		Potri.005G173300 [exp]	12.84	0.8296
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Potri.011G125800 [exp]	13.78	0.7763	Pt-UBP14.1
AT5G07590			Transducin/WD40 repeat-like su...		Potri.001G079100 [exp]	18.33	0.7951
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Potri.007G110800 [exp]	20.19	0.8263
AT5G37930			Protein with RING/U-box and TR...		Potri.017G122800 [exp]	24.49	0.8173
AT1G53860			Remorin family protein (.1)		Potri.001G163000 [exp]	26.53	0.8059

Compare expression of checked genes

Potri.007G000300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.