Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12340 152 / 1e-39 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 99 / 9e-22 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT2G27840 46 / 3e-05 HDT04, HDA13, HDT4 HISTONE DEACETYLASE 13, histone deacetylase-related / HD-related (.1.2) AT3G44750 45 / 5e-05 HDT1, HDA3, ATHD2A, HD2A HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) AT5G03740 42 / 0.0007 C2H2ZnF HD2C, HDT3 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G130900 [exp] 107 / 1e-24 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.012G129200 [exp] 106 / 4e-24 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.004G188800 [exp] 43 / 0.0005 AT3G44750 122 / 1e-33 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Potri.009G149400 [exp] 42 / 0.0006 AT3G44750 126 / 5e-35 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015029 [exp] 99 / 1e-21 AT4G25340 331 / 8e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10018845 [exp] 95 / 3e-20 AT3G12340 114 / 3e-29 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031700 [exp] 94 / 6e-20 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10011649 [exp] 93 / 9e-20 AT3G12340 92 / 7e-20 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031121 [exp] 93 / 1e-19 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10038905 [exp] 92 / 1e-19 AT4G25340 313 / 1e-102 FK506 BINDING PROTEIN 53 (.1.2) Lus10020542 [exp] 42 / 0.0001 AT3G44750 123 / 3e-36 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G000500.3 pacid=42766813 polypeptide=Potri.007G000500.3.p locus=Potri.007G000500 ID=Potri.007G000500.3.v4.1 annot-version=v4.1 ATGGCTTTCTGGGGAGTTGAAGTGAAACCCGGAAAGCCATTCATTCATGCACCGAATAATGGAAGAAGGCTCCACATTTCACAGGCAACTTTAGGGACTG GTAGTTCAATGAAGAACAGTGTGGTTCAGTGTAATGTAGGAAATTCCAGTCCCGTATATCTTTGTTCTTTGTTTCCTGAAAAGACTGAGATATCCCAATT GCATCTGGAATTCGAGGAGACAGTTGAAGTTGTTTTCTCAGTTATTGGTCCTCGGAGTGTTCATCTTACTGGTTATTATCTTGGTGGCCGCTGCGGTCAA CATTTTCATCCAGACGATGAGACAGAATCTTATGGAGAAGATATTGCAGATACAGAGACAGAAAGGTCTGCAAATGGCAGCGATGAAGATGAATACGAGG GTAGTTTCATTAATGATGATGAAGATCCAGAGATCATGTCACCATCCACTGTTTATAGCAGCGAAGTTGAAGAGATATTTGATAAGAAGAAACGTAAGAA TGGTAAGGGCAGCCACAAACGCCTTAGGAAGAAATTCCAATTCATTGAATCTGATGATGAAGATAAGATGCCTATTTCCTTCCTCCACGAGAGAGAATCT GCTGTAAAAAGCATGGGATCAGAAGCAGGTGAAAAATGTGAGAAGGAAAAAGGTGAAACAAGCGAGAAGAAGGTGAAAGATAATGGCAATTGGGTAACTG TATCAAAGGGGAATGCAGGTGCTATTTTAGGTGTGTCCAAAAGGCAGATAGATGATCACCATTCTTTCCTACCTTCATCTGATATGGGTTCTCAGAATGG TGCAAAACCTAAGAAGAAGGGGGAAAAACATTACAGGGAGGAGGTACCACTTGAAGATGACTTTTTCTTTTGCAGGGCTCTTGGTCAGCAGAAATCCATC CAAAGTGAGGTAGAGGCTGACAAATTGGACCTAGATTTGCCTGTGACTAAAGAAGACCAGAAGACTACAAATGACAAAAATGTTGAAAAGCTGAAGAGGA GAAGGAAAAAATATGCAAAGGAGAAGGAAAGTCTTGATGCTGACAATCATTTGAGTTACAAGCATAAAGCTCAGTCAGATGAGGCTGAAGCTAAAAACAC TTTGCAGGATATGCTGGTGACCGATAAAGAAAGTCACAAGGAAACAAATGATGAAGTTAAAAACACTCTGCAGGATATGCTGGTGACTGATAAAGGAAAT CAAAAGGACACAAATGATGAAGAAGATAAAGTCCAAGATGAAGCTAAAGCTGGAAAAACAGGGCAGGATATGCTATTGGTGAAGAAGGAAAATCAGAAGC AAGCAGATGATGATAGGGCTGTCTTGGCATGGAATTCCAATCTTCCTCCCACACAGTTGGACCTTGAAAGTGTTACGAAGCCAAAGAAGAAAAGGAAACA TGCAAATAAGAAAGTTCTTGATGCCATTAAAGAGCATGAAGGCAAGGAAGATGATTTCAAGACTGACTGCCATGACCATGAACTGTCTGTGCAAGATGAG CATGAAATTGGTGCAAAGCCAAAGAGGAAAAGGAAAGAACAGGCAGATAAGAAAATTCCTGGGACTTGCAGTGGCAGCCACAATAACGCCATTAAAGAGG AAGAAGGCAAGCAAGATGAGGACAAGCCTACCAGTTTAGACCCTGTTGTGTTTATGCAAGAGGAACAAAATCAGAAGCAACAGAGCTTTGTGACTTTTAA TGTTGACCAATCTGCTGAAGAGAGTCACTCCAAGAAGAAAAAGAAGATGAGGAAAAATGAAGAGAGTAAGAAGAGCAGGACTCGGGAAAGCATGGAAGCT TCAAATGGAATCAATGCATAA
AA sequence Show only first row Show all	>Potri.007G000500.3 pacid=42766813 polypeptide=Potri.007G000500.3.p locus=Potri.007G000500 ID=Potri.007G000500.3.v4.1 annot-version=v4.1 MAFWGVEVKPGKPFIHAPNNGRRLHISQATLGTGSSMKNSVVQCNVGNSSPVYLCSLFPEKTEISQLHLEFEETVEVVFSVIGPRSVHLTGYYLGGRCGQ HFHPDDETESYGEDIADTETERSANGSDEDEYEGSFINDDEDPEIMSPSTVYSSEVEEIFDKKKRKNGKGSHKRLRKKFQFIESDDEDKMPISFLHERES AVKSMGSEAGEKCEKEKGETSEKKVKDNGNWVTVSKGNAGAILGVSKRQIDDHHSFLPSSDMGSQNGAKPKKKGEKHYREEVPLEDDFFFCRALGQQKSI QSEVEADKLDLDLPVTKEDQKTTNDKNVEKLKRRRKKYAKEKESLDADNHLSYKHKAQSDEAEAKNTLQDMLVTDKESHKETNDEVKNTLQDMLVTDKGN QKDTNDEEDKVQDEAKAGKTGQDMLLVKKENQKQADDDRAVLAWNSNLPPTQLDLESVTKPKKKRKHANKKVLDAIKEHEGKEDDFKTDCHDHELSVQDE HEIGAKPKRKRKEQADKKIPGTCSGSHNNAIKEEEGKQDEDKPTSLDPVVFMQEEQNQKQQSFVTFNVDQSAEESHSKKKKKMRKNEESKKSRTRESMEA SNGINA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Potri.007G000500 [exp]	0	1
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Potri.002G241366 [exp]	2.44	0.8742
AT5G64420			DNA polymerase V family (.1)		Potri.009G079900 [exp]	4.58	0.8270
AT5G19300			unknown protein		Potri.010G091400 [exp]	4.89	0.8532
AT5G46680			Pentatricopeptide repeat (PPR-...		Potri.006G006500 [exp]	11.40	0.8218
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.006G143500 [exp]	13.96	0.8316
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.004G185200 [exp]	14.28	0.8161
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.005G126700 [exp]	21.42	0.8254
AT5G67610			Uncharacterized conserved prot...		Potri.007G005500 [exp]	25.09	0.7641
AT1G34150			Pseudouridine synthase family ...		Potri.002G061650 [exp]	27.71	0.8306
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.006G160400 [exp]	29.49	0.7350

Compare expression of checked genes

Potri.007G000500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.