Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65720 716 / 0 ATNIFS1, NIFS1 ,ATNFS1 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) AT1G08490 112 / 1e-26 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1) AT1G27980 52 / 7e-07 DPL1, ATDPL1 dihydrosphingosine phosphate lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G066000 [exp] 100 / 1e-22 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1) Potri.003G168800 [exp] 50 / 3e-06 AT1G27980 796 / 0.0 dihydrosphingosine phosphate lyase (.1) Potri.008G005101 [exp] 0 / 1 AT5G65720 99 / 9e-06 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011590 [exp] 792 / 0 AT5G65720 748 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10019252 [exp] 781 / 0 AT5G65720 734 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10011572 [exp] 481 / 3e-171 AT5G65720 439 / 1e-156 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10031670 [exp] 102 / 3e-23 AT1G08490 691 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF01212 [poplar] [flax] Beta_elim_lyase Beta-eliminating lyase
Representative CDS sequence Show only first row Show all	>Potri.007G000600.1 pacid=42764902 polypeptide=Potri.007G000600.1.p locus=Potri.007G000600 ID=Potri.007G000600.1.v4.1 annot-version=v4.1 ATGGCCACCTCGAAGCTTCTAGCTTCCACCCTCCGCAGAACCCTAACCACCTCTTCCTCCTTCCGCCGCTTCTCCACCGCAGCGGCAGAAGCAGTCGCGC TGGCATCAGAACCCGAAGATTCCATGATAATAAAAGGCGTGAAAATCTCATCTCGTCCTCTCTATCTCGACATGCAAGCAACATCTCCAGTAGACCCTAG GGTTCTCGACGCGATGCTCCCTTACTATCTCGCTCGCTACGGCAACCCTCACTCACGGACTCACCTTTACGGCTGGGAATCCGATCAAGCCGTCGAAACG GCCCGCTCTCAGATCGCCGATTTAATTGGCGCGTCGCCGAAAGAAATTGTCTTCACTTCAGGAGCGACGGAGTCTAATAATATTTCAGTCAAAGGAGTCA TGAAGTTTTATAAGGAAAAGAAACGACATGTCGTTACTACTCAGACGGAGCATAAGTGTGTTTTGGATTCTTGCAGGCATCTTCAGCAAGAGGGTTTTGA GGTTACGTATTTGCCTGTTGGGAATGATGGCATTGTTGATTTGGAGAAGCTGAAGGGATCGATTCGGCCGGATACTGGGCTTGTTTCGGTGATGGCGGTG AATAATGAGATTGGTGTGATTCAGCCAATGGAGGAGATTGGGGAAATTTGTAAGGAGTTGAATGTTCCATTTCATACGGATGCTGCGCAAGCGTTAGGGA AGATTCCGATTGATGTGGATAAGTGGAATGTGAGTTTGATGTCTTTGAGTGGGCATAAGATTTATGGGCCGAAAGGGGTTGGTGCTTTGTATATGCGTAG GCGGCCAAGGATAAGGGTGGAGCCCCAAATGAATGGGGGTGGACAAGAGAGAGGGATAAGGAGTGGGACGGTGCCTACTCCTTTAGTCGTGGGAATGGGG GCAGCCTGTGAATTGGCGAAAAAGGAAATGGAGTATGATGATAAGAGGATTAGGGCGTTGCACGAGAGGATGTTGAATGGTGTTAGGGCTAAGCTTGATG GTGTTGTGGTGAATGGGAGTGTTGAGAGGAGGTATGCTGGGAATTTGAATCTCTCGTTTGCTTACGTTGAAGGAGAGAGTTTGTTGATGGGGTTGAAGGA TGTGGCTGTGTCAAGTGGAAGTGCTTGTACGAGTGCTAGTTTGGAGCCTTCATATGTGCTGAGGGCATTAGGGGTGGATGAGGACATGGCACATACCTCC ATTAGGTTTGGAATTGGGAGGTTTACCACGGAGGAGGAGATTGATAGGGCAATTGAGCTCACGGTGCAGCAAGTTGAGAAGTTGAGGGAAATGAGCCCGC TTTATGAGATGGTAAAGGAAGGGATTGATATTAAGCAGATTCAATGGGCACAACACTGA
AA sequence Show only first row Show all	>Potri.007G000600.1 pacid=42764902 polypeptide=Potri.007G000600.1.p locus=Potri.007G000600 ID=Potri.007G000600.1.v4.1 annot-version=v4.1 MATSKLLASTLRRTLTTSSSFRRFSTAAAEAVALASEPEDSMIIKGVKISSRPLYLDMQATSPVDPRVLDAMLPYYLARYGNPHSRTHLYGWESDQAVET ARSQIADLIGASPKEIVFTSGATESNNISVKGVMKFYKEKKRHVVTTQTEHKCVLDSCRHLQQEGFEVTYLPVGNDGIVDLEKLKGSIRPDTGLVSVMAV NNEIGVIQPMEEIGEICKELNVPFHTDAAQALGKIPIDVDKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTPLVVGMG AACELAKKEMEYDDKRIRALHERMLNGVRAKLDGVVVNGSVERRYAGNLNLSFAYVEGESLLMGLKDVAVSSGSACTSASLEPSYVLRALGVDEDMAHTS IRFGIGRFTTEEEIDRAIELTVQQVEKLREMSPLYEMVKEGIDIKQIQWAQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Potri.007G000600 [exp]	0	1
AT1G01840			unknown protein		Potri.002G153000 [exp]	1.00	0.9428
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.001G215800 [exp]	4.12	0.8871
					Potri.017G120301 [exp]	6.00	0.9221
AT4G07990			Chaperone DnaJ-domain superfam...		Potri.002G114600 [exp]	6.48	0.9033
AT3G48070			RING/U-box superfamily protein...		Potri.015G069400 [exp]	13.71	0.9071
AT1G04555			unknown protein		Potri.008G173000 [exp]	15.32	0.9051
AT1G53460			unknown protein		Potri.001G376900 [exp]	17.60	0.8794
AT1G31220			Formyl transferase (.1)		Potri.012G107500 [exp]	24.97	0.8913
AT3G04310			unknown protein		Potri.019G023400 [exp]	25.09	0.8979
AT5G09320		VPS9B	Vacuolar sorting protein 9 (VP...		Potri.009G169600 [exp]	33.36	0.8988

Compare expression of checked genes

Potri.007G000600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.