Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50410 1083 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G20010 1005 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G61140 813 / 0 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G11100 754 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT3G16600 494 / 3e-163 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT5G22750 361 / 2e-108 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G43530 350 / 1e-102 Helicase protein with RING/U-box domain (.1) AT5G05130 313 / 2e-92 DNA/RNA helicase protein (.1) AT1G05120 288 / 2e-83 Helicase protein with RING/U-box domain (.1) AT1G02670 270 / 3e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037700 [exp] 890 / 0 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.011G046400 [exp] 863 / 0 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.004G189400 [exp] 342 / 2e-101 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 334 / 2e-99 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.006G035700 [exp] 309 / 1e-90 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.014G154600 [exp] 277 / 3e-79 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.016G034000 [exp] 268 / 4e-76 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 246 / 3e-68 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033800 [exp] 237 / 2e-65 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041008 [exp] 1206 / 0 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 1132 / 0 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10011211 [exp] 866 / 0 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10018465 [exp] 525 / 7e-169 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10043365 [exp] 368 / 2e-110 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10039001 [exp] 326 / 7e-97 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 314 / 6e-91 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10030044 [exp] 276 / 7e-78 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10027296 [exp] 129 / 6e-32 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10019523 [exp] 115 / 1e-28 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0229 [poplar] [flax] RING PF13923 [poplar] [flax] zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.007G000700.4 pacid=42765359 polypeptide=Potri.007G000700.4.p locus=Potri.007G000700 ID=Potri.007G000700.4.v4.1 annot-version=v4.1 ATGGCTGCTATAAGTCCTATAGAAATCAGTTCATCTGATAGTGATTTCAATTTTACTGACGATGATGAGGTTGAAATATCGCCTGTAAATGCAAGGGACT CTGCCAATACCAGGACGCTTCCGGATTGGGCTACTGCTCATCCCACAACCTCAAGATATACAGGTTATGGCGGGCAGACACAAAATGCCTCCCCTCTTAA AAGACCATATGCTTCAAATGGGAGTAGTTCATCAAATGTAAATGACCTTTCATGGATGAAGATCCACGGTCAACCTACCAACGGTGCCAACATTAGAGAC ACAAGTTGGCCTAGTGCTCGAGGCGATGGTACTCGGCATTTTATAGGGACTGGGAATGTGGGTCAGCCTCGGGCTGTTAATTCTCAAATTGCTAATGTTT CTGGTGCAGATTACGAGAAGCTTTCATCCCAACAGGCTTTAAAGAGGACCCTTCCGTCATCTCTTCATCCATCTGAACCGAGTAATAAAGCAAACAACAC GGTAGAGAATGCCAGCAGCAGTGGGTCTCGTGATATCTATGGAAATGCTTATCATCTTGCAGGACCAAGTGTAACTAATAGCAGGGGTTATACGAGAGAC ATTCACAGCAAGCGCAATAATGATGATATTATGATGTATGAAAATAACGGAAGCAGGATCCCACCTCCATCTTTTATGCATGGAAAACCTTCTGCACAAT TTCCTGGTCCAAGTGAACCTGTGTATCACTCCATGGCTGGGGATGAAAATGCTGCTGGAACGGACGAGAGACTGGTCTATCAAGCGGCACTGGAAGATCT TAATCAACCAAAAGTTGAAGCTAATCTACCTGATGGTCTTATGTCTGTGCCTCTTCTCAGACATCAGAAAATTGCTTTGGCATGGATGCTTCAGAAGGAA ACAAGAAGCTTGCATTGTCTAGGTGGAATTTTAGCTGATGATCAGGGCCTTGGTAAAACAATCTCAATGATTGCCCTTGTACAAATGCAAAAGTCTTTGG AGACAAAATCGAAGTCTGAAGATCAGCGCAATCACAAAACTGAAGCATTGAATTTGGATGACGATGATGATAATGGAACTCTTGTCTTGGATAAAGACAA GCAGACTAGAGAGTCGGCTGATATTAAATCTACCCCAGAAGCTGGTTCTTCTACAAAGGCAATTAGTAGACGTAGACCAGCAGCAGGTACACTAGTGGTG TGTCCGGCGAGTGTTCTCCGACAATGGGCCCGGGAGCTGGATGATAAAGTTGCTGATGGAGCCAAACTTTCTGTCCTGATCTATCATGGTGGCAATCGTA CAAGGAGTCCTGATGAATTGGCTAAACATGATGTGGTTTTGACTACATATTCAATTGTAACTAATGAAGTTCCAAAACAGCCTTTGGTTGATGAGGATGA GGCTGATGATAAAAATGGTGAAAAGCATGGATTATCTTCGGAGTTTTCAAATAATAAGAAGAGGAAGAAGACTTCTAAAGTCAGCAAGAAGAGAGGCAGA AAGGGAATGGATAGTTCCTCTATTGATTGTGACTTCGGTGCACTTGCTAGAGTGAGCTGGTCTAGGGTGATACTGGATGAAGCTCAAACTATAAAAAATC ACCGAACTCAAGTAGCTCGAGCCTGCTGCAGCCTTCGTGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATACAAAACTCAATTGATGATTTATACAG CTACTTCAGATTCCTCAGATACGACCCTTACGCTGTTTACAAATCATTTTACAATACCATTAAAGTTCCTATATCCAGAAACTCATTGCATGGTTACAAG AAGCTGCAGGCAGTTCTAAGGGCTATAATGCTGCGTCGTACAAAAGCAACATTGATTGATGGGCAGCCTATAATTAACCTGCCACCAAAATCAATCTGCT TGACAAAGGTAGACTTCTCAACTGAGGAGCGGGCTTTCTATACTCGGCTAGAAGCAGATTCTCGTTCTAAATTCAAGGCTTATGCCGCTGCTGGCACAGT GAACCAAAATTATGCAAATATACTTTTGATGCTTTTGCGACTTCGCCAGGCTTGTGACCATCCACTTCTTGTTAAAGGTTTTAATTCTGAATCTGTAGAA AAAGATTCAGCTGAAATGGCAAATCAACTTCCCAGGGAGATGGTGGTGGATCTATTGAATCGCGTGACCTCTGCCCTCTGTCGTGTATGCAATGATCCGC CTGAGGACTCTGTTGTTACCATGTGTGGCCATGTTTTCTGCAATCAATGTGTATCAGAATACTTGACAGGAGATGATAATACATGCCCTGCTTCTGACTG TAAAGAACAACTTGGTTCTGATGTTGTTTTCTCTGAAGCTACTCTTAGAAGAAGAATCTCTGACACCTTTGATGCTAGTTCCTCACATTCCAAATTTGAT GATAAGTCAATAGTCCTTCAGCATGAGTATAATTCCTCAAAAATCAAAGCTGTTCTTGAGGTTATTCAGTCACATTGTAAGGCAGGGAGTCCAATTTCAG AGTTTAATGGTTCTGCAGGATGCATTGAAACATCGATGGCATATTCAAGGTTGTCAACTGAAGGACCTATAAAAGCAATTGTTTTCTCCCAGTGGACTAG CATGTTGGATCTGGTTGAGTTTTCATTGAATCAGCATTGTATCCAGTATAGGAGGCTTGATGGTACAATGACTCTAAGTTCAAGAGATAAGGCTGTTAAA GATTTCAACACTGATCCTGAGGTAACTGTGATGCTAATGTCCCTGAAGGCAGGAAACCTAGGTTTGAATATGGTGGCTGCATGCCATGTCATCCTTCTGG ATCTTTGGTGGAATCCAACCACTGAGGATCAGGCTATTGATCGAGCCCATAGGATTGGACAGACCCGTCCTGTTACAGTAACACGACTTACCATAAAAGA CACCGTTGAAGATAGAATATTAGCTCTTCAGGACGAGAAGAGAAAAATGGTTGCATCTGCATTTGGCGAAGATCAAAGTGGGGGTTCAGCTACTCGTCTT ACTGTGGAAGATCTCAAATATCTATTTATGGTCTAG
AA sequence Show only first row Show all	>Potri.007G000700.4 pacid=42765359 polypeptide=Potri.007G000700.4.p locus=Potri.007G000700 ID=Potri.007G000700.4.v4.1 annot-version=v4.1 MAAISPIEISSSDSDFNFTDDDEVEISPVNARDSANTRTLPDWATAHPTTSRYTGYGGQTQNASPLKRPYASNGSSSSNVNDLSWMKIHGQPTNGANIRD TSWPSARGDGTRHFIGTGNVGQPRAVNSQIANVSGADYEKLSSQQALKRTLPSSLHPSEPSNKANNTVENASSSGSRDIYGNAYHLAGPSVTNSRGYTRD IHSKRNNDDIMMYENNGSRIPPPSFMHGKPSAQFPGPSEPVYHSMAGDENAAGTDERLVYQAALEDLNQPKVEANLPDGLMSVPLLRHQKIALAWMLQKE TRSLHCLGGILADDQGLGKTISMIALVQMQKSLETKSKSEDQRNHKTEALNLDDDDDNGTLVLDKDKQTRESADIKSTPEAGSSTKAISRRRPAAGTLVV CPASVLRQWARELDDKVADGAKLSVLIYHGGNRTRSPDELAKHDVVLTTYSIVTNEVPKQPLVDEDEADDKNGEKHGLSSEFSNNKKRKKTSKVSKKRGR KGMDSSSIDCDFGALARVSWSRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYKSFYNTIKVPISRNSLHGYK KLQAVLRAIMLRRTKATLIDGQPIINLPPKSICLTKVDFSTEERAFYTRLEADSRSKFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKGFNSESVE KDSAEMANQLPREMVVDLLNRVTSALCRVCNDPPEDSVVTMCGHVFCNQCVSEYLTGDDNTCPASDCKEQLGSDVVFSEATLRRRISDTFDASSSHSKFD DKSIVLQHEYNSSKIKAVLEVIQSHCKAGSPISEFNGSAGCIETSMAYSRLSTEGPIKAIVFSQWTSMLDLVEFSLNQHCIQYRRLDGTMTLSSRDKAVK DFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRLTIKDTVEDRILALQDEKRKMVASAFGEDQSGGSATRL TVEDLKYLFMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	0	1
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.017G128300 [exp]	2.00	0.8853
AT3G09100			mRNA capping enzyme family pro...		Potri.006G096000 [exp]	2.44	0.8940
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	3.00	0.8795
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Potri.001G031400 [exp]	4.47	0.8427	Pt-RBR1.1
AT3G13330		PA200	proteasome activating protein ...		Potri.011G167700 [exp]	5.29	0.8551
AT1G27595			unknown protein		Potri.002G107400 [exp]	5.65	0.8783
AT5G53620			unknown protein		Potri.015G006700 [exp]	6.00	0.8442
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Potri.018G039500 [exp]	6.70	0.8634
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Potri.007G092200 [exp]	6.92	0.8651
AT3G06670			binding (.1.2)		Potri.010G142200 [exp]	7.41	0.8764

Compare expression of checked genes

Potri.007G000700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.