Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23420 156 / 9e-48 HMGB6 high-mobility group box 6 (.1.2) AT2G17560 90 / 6e-23 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT1G20696 84 / 2e-20 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT3G51880 83 / 6e-20 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT4G35570 82 / 6e-20 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT1G20693 80 / 5e-19 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT2G34450 79 / 1e-18 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT5G23405 57 / 3e-10 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT4G23800 51 / 1e-07 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT5G05330 49 / 5e-07 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2), HMG-box (high mobility group) DNA-binding family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G101400 [exp] 86 / 1e-21 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 81 / 6e-19 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.002G009000 [exp] 78 / 3e-18 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.005G252600 [exp] 78 / 3e-18 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.008G067400 [exp] 75 / 9e-17 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.004G131400 [exp] 72 / 9e-16 AT2G34450 132 / 6e-40 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) Potri.014G007300 [exp] 55 / 3e-10 ND / Potri.019G049100 [exp] 52 / 3e-08 AT5G05330 139 / 3e-41 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2), HMG-box (high mobility group) DNA-binding family protein (.3) Potri.001G093700 [exp] 49 / 5e-07 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041009 [exp] 189 / 3e-60 AT5G23420 178 / 1e-55 high-mobility group box 6 (.1.2) Lus10013453 [exp] 178 / 7e-56 AT5G23420 160 / 5e-48 high-mobility group box 6 (.1.2) Lus10012252 [exp] 87 / 4e-22 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 87 / 1e-21 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10025391 [exp] 82 / 1e-19 AT2G34450 137 / 8e-42 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) Lus10012250 [exp] 86 / 2e-19 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10035511 [exp] 82 / 3e-19 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10040192 [exp] 81 / 5e-19 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10028298 [exp] 81 / 6e-19 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10030738 [exp] 80 / 9e-19 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [poplar] [flax] HMG-box PF00505 [poplar] [flax] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Potri.007G000900.1 pacid=42766265 polypeptide=Potri.007G000900.1.p locus=Potri.007G000900 ID=Potri.007G000900.1.v4.1 annot-version=v4.1 ATGGCAAGGAAGAGAGTGGAGGCTGAGTCTACAGATGGGTCTGTTGATGCCAATACTACCACTTCACTTGTTCGTGCGAAAGATGGCAGTGCTTTTACTA AGTGTGAGGAGTGCAAGAAGGATGTGCCAGTGGCTCTTATAAGTTTCCACAGCTGTAGCCTTGATGCTAAGATCAAGATGAATTTGGAGGCTCAAGTTGT TGAAAAGCCAACTGAAGCTAAGCAGAAACCAGCTGAGAGGAAGAAAGGAAGTTCAACTGAGCCAAAATTGAAGAAAGCTAAAAAAGAAAAGAAGGGCAGG GATCCAAATGCACCGAAACGCCCTCCCACTGCATTCTTTCTCTTTATGGATGACTTTAGGAAGGAATACAAGGAAGCGAACCCGGACTCTAAGGATGTTA AGAAGGTTGCGAAGGAAGGTGGTGTGAGATGGAAGTCAATGACCGATGAAGAGAAGAAGCAATATGTGGATAAGGCTGCTGAGCTCAAGGCAGAGAATGA CAAGGCATTGGAGAGTGACAACGCTGAAAATGAAGATGACGAAGGGGTTTCTTCAGAGAAGGAAGTAGCCGATCTTGAACTGCGAGATAAAGAGGAGGAA ATTTGA
AA sequence Show only first row Show all	>Potri.007G000900.1 pacid=42766265 polypeptide=Potri.007G000900.1.p locus=Potri.007G000900 ID=Potri.007G000900.1.v4.1 annot-version=v4.1 MARKRVEAESTDGSVDANTTTSLVRAKDGSAFTKCEECKKDVPVALISFHSCSLDAKIKMNLEAQVVEKPTEAKQKPAERKKGSSTEPKLKKAKKEKKGR DPNAPKRPPTAFFLFMDDFRKEYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQYVDKAAELKAENDKALESDNAENEDDEGVSSEKEVADLELRDKEEE I

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Potri.007G000900 [exp]	0	1
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Potri.012G126000 [exp]	2.64	0.8705	CBP.2
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Potri.013G028800 [exp]	2.82	0.9093
AT3G18800			unknown protein		Potri.019G006500 [exp]	3.87	0.8880
AT5G59970			Histone superfamily protein (....		Potri.005G115300 [exp]	4.00	0.8421	HFO911
AT5G43530			Helicase protein with RING/U-b...		Potri.003G083400 [exp]	4.47	0.8854
AT2G23530			Zinc-finger domain of monoamin...		Potri.009G108400 [exp]	8.24	0.8412
AT3G48490			unknown protein		Potri.015G091100 [exp]	9.53	0.8508
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Potri.006G275700 [exp]	10.24	0.8436
AT5G59970			Histone superfamily protein (....		Potri.007G013500 [exp]	11.48	0.8516	HFO909
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Potri.015G057300 [exp]	12.24	0.8853

Compare expression of checked genes

Potri.007G000900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.