Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23400 642 / 0 Leucine-rich repeat (LRR) family protein (.1) AT1G33590 234 / 4e-70 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 228 / 8e-68 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 207 / 4e-60 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 196 / 8e-56 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 187 / 1e-52 Leucine-rich repeat (LRR) family protein (.1) AT1G33612 184 / 8e-52 Leucine-rich repeat (LRR) family protein (.1) AT4G20140 179 / 2e-47 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G36180 173 / 2e-45 Leucine-rich receptor-like protein kinase family protein (.1) AT3G12610 164 / 5e-45 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016700 [exp] 256 / 1e-76 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.010G040200 [exp] 236 / 8e-69 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117700 [exp] 222 / 5e-64 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.013G098900 [exp] 208 / 3e-60 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098850 [exp] 207 / 6e-60 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.016G137000 [exp] 198 / 3e-54 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G009200 [exp] 184 / 2e-49 AT1G45616 386 / 7e-118 receptor like protein 6 (.1) Potri.013G091000 [exp] 182 / 2e-48 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G008375 [exp] 180 / 7e-48 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041010 [exp] 522 / 1e-180 AT5G23400 557 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041013 [exp] 521 / 3e-180 AT5G23400 552 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10013454 [exp] 514 / 2e-177 AT5G23400 536 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002936 [exp] 219 / 2e-64 AT1G33590 594 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002937 [exp] 201 / 2e-57 AT1G33590 559 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041064 [exp] 183 / 1e-51 AT1G33590 488 / 3e-171 Leucine-rich repeat (LRR) family protein (.1) Lus10009394 [exp] 189 / 1e-50 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002551 [exp] 177 / 1e-49 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10030855 [exp] 182 / 2e-48 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037705 [exp] 172 / 3e-48 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.007G001000.1 pacid=42766195 polypeptide=Potri.007G001000.1.p locus=Potri.007G001000 ID=Potri.007G001000.1.v4.1 annot-version=v4.1 ATGCAGATTCTAGGATGGGTTTCTAAGCTTTTACTGCTATCCTTCTTTCTTGCTGTGGTTTCACCACTGTCACTTGCTCAAACAATAACCCCACTGCAGA CCTCAGTTTGCTCAGAGGCGGACAGGGTAGCTCTTCTTGGCTTCAAAGCAAGAATCTTGAAGGATGCTACAGATATTCTCTCTTCATGGATAGGGAAGGA TTGTTGTGGAGGGGATTGGGAGGGTGTTCAATGCAACCCTGCTACAGGTAGGGTTACTGATTTGGTGTTGCAGGGACCTGCGAGGGACAGTGGCATTTAC ATGAGGGGCACTTTGTCACCTTCTCTTGGCAGTTTGGCATTCTTAGAGGTGATGGTGATAAGTGGTATGAAGCATATTGCAGGTCCTATTCCTGAAAGCT TCTCTAGTTTGACCCATCTCACACAATTGGTCCTAGAGGATAATTCTCTTGAAGGGAACATTCCTCCTGGTTTAGGCCGTTTGCCCTTGCTCAATATCCT CTCATTGAATGGAAACCATTTGAGAGGGCAGATTCCTCCAAGCCTAGGTAATTTTAAAAAGCTCCAGCAGTTGAGTTTAGCAAGAAATTTGTTATCAGGT CCTATCCCAATCACTTTCCAAAATTTCCTTAGTTTGCAATCTCTTGATTTGAGTTTCAATTTGTTGTCTGGGTTGATTCCAGATATTCTGGGGCACTTTC AAAACCTCACCTTCATTGACCTGTCCAATAACCAATTGTCTGGGCTCTTACCACCTTCACTGTTCAGCCTGGTCAAACTTCAGGACTTGTCCCTGGATCA TAACCAGCTGACAGGAAGAATCCCAAACCAAATTGCAGGCCTAAAATCTCTTACTCATCTCTCTTTGAGTTCTAATAGGCTTACAGGTCAAATCCCTTCA TCCATTTCAAGCTTACAGAACCTTTGGTACCTTAACTTATCCAGAAATGGGCTCTCAGATCCCTTTCCAGTTATTGAAGGCAGAGGTCTTCCTTCTCTAT TGTCAATAGACCTGTCCTACAACCACCTCAGTTTAGGGACAGTTCCTGCTTGGATCAAAGATAGACAACTTTCAGATGTTCATCTAGCTGGCTGTAAACT TGAAGGAAACCTTCCAAAATTTACAAGACCAGATTCTTTGAGCTCTTTAGACCTATCTGATAACTTCCTCGTAGATGGCATTGCTGGTTTCTTCACCAAC ATGTCTAATTTGCAAAAGCTCAAGCTGTCAAACAACCAATTGAAGTTTGACCTTTTCGACATCAAATTGCCGGATGGAATTTCTTCAATCGAGCTCCAAT CAAATCAGCTCAGTGGGTTTCTCTCAAGGATCTTAAATAACAGGACAAGCAGCTTTTTGGAGGTTTTAGATGTATCAGGGAACCAAATTTCAGGCACAAT GCCAGAATTCATTGAAGGATTGAGCTTGAAGGTTCTAAACATAGGAAGCAACAAGATTACAGGTCAGTTCCCTGGTTCAATCTCAAACCTGAAAGAACTG GAGAGGATGGATATTTCAAGGAACCAGATAACAGGCACCATTCCAACTACCTTGGGGCTCTTGTCGAATCTTCAATGGCTTGACCTTTCTATCAACAGAC TCACAGGGAAAATCCCAGCCAGCTTGTTGGGGATTACAAATCTGAGACATGCAAGCTTCAGGGCCAACAGGCTTTGTGGAGAGATCCCACAAGGTAGACC TTATAATATCTTCCCTGCAGGTGCTTATGCTCACAATCTATGCTTATGTGGCAAGCCTCTGCCACTTTGTAGGACAAAGAAATGA
AA sequence Show only first row Show all	>Potri.007G001000.1 pacid=42766195 polypeptide=Potri.007G001000.1.p locus=Potri.007G001000 ID=Potri.007G001000.1.v4.1 annot-version=v4.1 MQILGWVSKLLLLSFFLAVVSPLSLAQTITPLQTSVCSEADRVALLGFKARILKDATDILSSWIGKDCCGGDWEGVQCNPATGRVTDLVLQGPARDSGIY MRGTLSPSLGSLAFLEVMVISGMKHIAGPIPESFSSLTHLTQLVLEDNSLEGNIPPGLGRLPLLNILSLNGNHLRGQIPPSLGNFKKLQQLSLARNLLSG PIPITFQNFLSLQSLDLSFNLLSGLIPDILGHFQNLTFIDLSNNQLSGLLPPSLFSLVKLQDLSLDHNQLTGRIPNQIAGLKSLTHLSLSSNRLTGQIPS SISSLQNLWYLNLSRNGLSDPFPVIEGRGLPSLLSIDLSYNHLSLGTVPAWIKDRQLSDVHLAGCKLEGNLPKFTRPDSLSSLDLSDNFLVDGIAGFFTN MSNLQKLKLSNNQLKFDLFDIKLPDGISSIELQSNQLSGFLSRILNNRTSSFLEVLDVSGNQISGTMPEFIEGLSLKVLNIGSNKITGQFPGSISNLKEL ERMDISRNQITGTIPTTLGLLSNLQWLDLSINRLTGKIPASLLGITNLRHASFRANRLCGEIPQGRPYNIFPAGAYAHNLCLCGKPLPLCRTKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23400			Leucine-rich repeat (LRR) fami...		Potri.007G001000 [exp]	0	1
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Potri.015G122100 [exp]	4.24	0.9068
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.003G112700 [exp]	7.07	0.9223	Pt-SKU5.1
AT4G24780			Pectin lyase-like superfamily ...		Potri.001G339500 [exp]	7.14	0.8772
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Potri.014G071700 [exp]	9.05	0.9187	Pt-FLA8.1
AT1G80690			PPPDE putative thiol peptidase...		Potri.001G047800 [exp]	9.79	0.9155
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.017G088600 [exp]	11.31	0.9088
AT4G22250			RING/U-box superfamily protein...		Potri.014G158900 [exp]	11.48	0.9119
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.016G013700 [exp]	12.00	0.8966	GDI1.2
AT2G23360			Plant protein of unknown funct...		Potri.001G304200 [exp]	12.40	0.8987
AT1G04030			unknown protein		Potri.002G258501 [exp]	16.61	0.9170

Compare expression of checked genes

Potri.007G001000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.