Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19990 632 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017359 [exp] 597 / 0 AT3G19990 592 / 0.0 unknown protein Lus10010154 [exp] 594 / 0 AT3G19990 583 / 0.0 unknown protein Lus10038848 [exp] 527 / 0 AT3G19990 536 / 0.0 unknown protein Lus10028680 [exp] 146 / 5e-41 AT3G19990 144 / 1e-40 unknown protein Lus10028681 [exp] 120 / 7e-33 AT3G19990 110 / 4e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G001200.1 pacid=42766056 polypeptide=Potri.007G001200.1.p locus=Potri.007G001200 ID=Potri.007G001200.1.v4.1 annot-version=v4.1 ATGCCCTCATCCTTCACTGTCTCACCATGTGAAGATTCCCAAGAAACCAACTACCTGCAAACCCTTTTGGCCTCAGCTCGTCCTTTCCTTAGAGGAGAGC TAGAATCCATTGATAAGAACTTGCCTTCCCTCATTTCTGTGTTACGTTCTGTTGGTGCTGGTGAATGCTGGCACAAACATGGCAGCTTTCTTGATCACCT AGTTGAAATTTACCGTATTCTCAAGATATGGAAAGCCCCTGACTCTGTCTGTCTCTGTGGCCTTTTCCATTCTGCCTATTCCAATTCTTATGTCAATCTT GCTATCTTTGATCCTAACACCGGTCGAGATGTTGTTCGCAACCATGTTGGTGAGGCTGCTGAAAGGTTGATTCACTTGTTTTGTATTGTCCCTCGCCAAT CATTGATCCATGATGATCTGTTGTTCAAGTATTCTGATATAGAACTTGTTGAACACCTTAAAGCTTCTGAGTTGTCACTGAGGAATGCAGGAGAGAAGGG TTTGTTCAATGGAGAGGAGTCTTGGAGGAAGAAACTGGCTTCTCTTTTGCCTGCCAGTGGGATAACAGTGAAGCATATAAAGAGTGGAGAAGATGTTTTA GTGACCAGAAGAATGGTGGGTGTTTTTCTCTTGATGACCATGGCTGATTTTAGTGATCAACTTTTTGGTTTTCAAGATTTGTTGTTTGAAAACTTTGATG GTCGTCTTGAGTTTCTAGGGAATAATTTTGGTGCTTTGTGGCCTGGAGATGGCAAGCCAGGGCTATGGATCAATTCAATATCAAGGATGGGTGCAATTTA CTCTTTGATTGTGAGAGAGGAAGAGATTTTTATTGAAGAGAGGAAGAGGGCTGGTGGTTTTGAAGTTGACAGAGAGAGAGATGAAGATATAGAGCTTGTG TTGGCACCAGTTTTTGAGAATTGTACTCAAGTTTTGGATGCAAGAGAGCAGGTAGTGGCAAGGGACTTGTATTGGGAAGCTGTTTGTGATACCTCAAAGG GAGGGTTGGAGAGGGCTGAGGAGTTGTTGGTGAGCAGCATTGAGAAGAACCCTTTTGTTGGTGAGCCTCATGTGGTCTTGGGTCAATTTTATTTGACAAA AGGGAGGTTTGAGGAGGCCGAGAAAGAAGCTGAGAGAGGGGTCACACTCTTGTTAGAGTGGGGTAGTCCTTGGGATAAGAGGATGTCTTGGGAAGGATGG ATTGCTTGGGCCAGGGTCTTGTTGATGAAAGCTAAAGAGAAGTCATGGCCGCAGACATCTTGGGGCATCCTTAATTTAGGGCTTGTGAGGTAA
AA sequence Show only first row Show all	>Potri.007G001200.1 pacid=42766056 polypeptide=Potri.007G001200.1.p locus=Potri.007G001200 ID=Potri.007G001200.1.v4.1 annot-version=v4.1 MPSSFTVSPCEDSQETNYLQTLLASARPFLRGELESIDKNLPSLISVLRSVGAGECWHKHGSFLDHLVEIYRILKIWKAPDSVCLCGLFHSAYSNSYVNL AIFDPNTGRDVVRNHVGEAAERLIHLFCIVPRQSLIHDDLLFKYSDIELVEHLKASELSLRNAGEKGLFNGEESWRKKLASLLPASGITVKHIKSGEDVL VTRRMVGVFLLMTMADFSDQLFGFQDLLFENFDGRLEFLGNNFGALWPGDGKPGLWINSISRMGAIYSLIVREEEIFIEERKRAGGFEVDRERDEDIELV LAPVFENCTQVLDAREQVVARDLYWEAVCDTSKGGLERAEELLVSSIEKNPFVGEPHVVLGQFYLTKGRFEEAEKEAERGVTLLLEWGSPWDKRMSWEGW IAWARVLLMKAKEKSWPQTSWGILNLGLVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19990			unknown protein		Potri.007G001200 [exp]	0	1
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.001G225400 [exp]	6.00	0.8263
AT1G68300			Adenine nucleotide alpha hydro...		Potri.008G121900 [exp]	8.60	0.8305
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Potri.007G115900 [exp]	13.26	0.8403
AT5G17380			Thiamine pyrophosphate depende...		Potri.004G094600 [exp]	14.00	0.7757
AT5G15870			glycosyl hydrolase family 81 p...		Potri.004G105300 [exp]	17.74	0.7984
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Potri.007G116100 [exp]	19.36	0.8179
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	21.00	0.8302
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Potri.017G055400 [exp]	22.22	0.7914
AT2G16750			Protein kinase protein with ad...		Potri.009G134700 [exp]	28.53	0.7933
AT5G13330	AP2_ERF	RAP2.6L	related to AP2 6l (.1)		Potri.003G162500 [exp]	30.28	0.8147

Compare expression of checked genes

Potri.007G001200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.