Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19430 453 / 3e-160 DWA1, AtTHO6 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 (.1) AT3G49660 61 / 3e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 61 / 6e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 59 / 2e-09 TAF5 TBP-associated factor 5 (.1) AT4G15900 59 / 3e-09 PRL1 pleiotropic regulatory locus 1 (.1) AT5G64730 54 / 6e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G04140 54 / 9e-08 Transducin family protein / WD-40 repeat family protein (.1.2) AT1G61210 51 / 8e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G50230 50 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49040 50 / 3e-06 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263400 [exp] 67 / 8e-12 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 66 / 9e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 63 / 7e-11 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 61 / 6e-10 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.010G012800 [exp] 61 / 7e-10 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.002G051900 [exp] 55 / 2e-08 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 53 / 1e-07 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G049500 [exp] 52 / 3e-07 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.008G002300 [exp] 51 / 9e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011938 [exp] 518 / 0 AT2G19430 422 / 6e-148 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 (.1) Lus10027630 [exp] 496 / 6e-177 AT2G19430 423 / 3e-148 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 (.1) Lus10024447 [exp] 68 / 5e-12 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 64 / 7e-11 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10006511 [exp] 59 / 4e-09 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 58 / 6e-09 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10039636 [exp] 57 / 6e-09 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 57 / 8e-09 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001301 [exp] 57 / 2e-08 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10003855 [exp] 53 / 1e-07 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.007G001500.11 pacid=42766357 polypeptide=Potri.007G001500.11.p locus=Potri.007G001500 ID=Potri.007G001500.11.v4.1 annot-version=v4.1 ATGTTTGGAGACGCAACGAACTGGAATGAGGATGCATACAAAGAGAGCATTCTAAAAGATCGAGAAATCCAAACCCTAACTGTCTTTAGAACTGCGTGGC CACCATCTTCAAACCCTAACCCCAACACTATCGTCCTCGCCTCCAGCGATGGCTCACTCACCTCTTACTCCATCTCCGAAATTCCATTGGGTTTTAGTGA TTCAAGGGCACCACAGGTTAAACCTAATGCATTCCTTCAAGGACATGACGGACCTGCCTATGATGTCAAATTTTATGGCAATGCTGAAGAAGATGCTTTA TTACTGAGTTGTGGTGATGATGGTCGAATTCGAGGATGGAGGTGGGAGGAATTTATGCAATCTCAGGTGCCTGTTGCTTTGCAAGGAAATCACATAGAGC CAATAGTTGATATGGTGAATCCCCAGCACAAGGGTCCTTGGGGTGCTCTATCCCCAATTCCAGAAAACAATGCCATTGCAGTGGATACCCAGAGGGGTTC CATTTTCTCAGCTGCCGGGGATTCTTGTGCATATTGTTGGGATGTGGAAACTTGTAAGATCAAAATGTGTTTTAAGGGACACTTGGACTACTTGTATTGT ATAGTTGCTCGTAACTCCACTAATCAGATCATAACTGGTTCAGAGGATGGTTCTGCAAGACTTTGGGATTGCAGAAGTGGAAAGTGTATCCGGGTAATTG ATTCAGTGAAGGATGAGAAGTTCAAAGGATTTTCCTCATCTGTCAGCTGTGTTGCTCTTGATGCAAGTGAGAGCTGGTTGGCTTGTGGCAGTGGTCGAAG TTTATCGGTCTGGAATCTTCCTGCTTCTGAATGTGTTTCAAGGATGTGCACTCGTGCATCCATACAGGATGTAATATTTAGTGACAATCAAATTCTAGCT GTCGGAGCAGAGCCTGTAATGAGTCGTTTTGACATAAATGGGGCAGTTCTTTCTCAAATACCATCTGCTCCTCAATCAGCATTCTCTGTTTCTGTACACC CATCAGGGGTGACTGCAGTTGGAGGTTATGAAGGTCTTGTAGATATCATCTCTCAGTTTGGAAGCCACTATTGCACTTTCCACTGCCAATGCGTCTGA
AA sequence Show only first row Show all	>Potri.007G001500.11 pacid=42766357 polypeptide=Potri.007G001500.11.p locus=Potri.007G001500 ID=Potri.007G001500.11.v4.1 annot-version=v4.1 MFGDATNWNEDAYKESILKDREIQTLTVFRTAWPPSSNPNPNTIVLASSDGSLTSYSISEIPLGFSDSRAPQVKPNAFLQGHDGPAYDVKFYGNAEEDAL LLSCGDDGRIRGWRWEEFMQSQVPVALQGNHIEPIVDMVNPQHKGPWGALSPIPENNAIAVDTQRGSIFSAAGDSCAYCWDVETCKIKMCFKGHLDYLYC IVARNSTNQIITGSEDGSARLWDCRSGKCIRVIDSVKDEKFKGFSSSVSCVALDASESWLACGSGRSLSVWNLPASECVSRMCTRASIQDVIFSDNQILA VGAEPVMSRFDINGAVLSQIPSAPQSAFSVSVHPSGVTAVGGYEGLVDIISQFGSHYCTFHCQCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Potri.007G001500 [exp]	0	1
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.004G095000 [exp]	3.46	0.7802
AT3G15690			Single hybrid motif superfamil...		Potri.001G172600 [exp]	3.87	0.7855
AT5G67350			unknown protein		Potri.007G051800 [exp]	5.29	0.7499
AT4G21530		APC4	anaphase promoting complex 4, ...		Potri.004G034900 [exp]	10.48	0.7973
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Potri.009G044300 [exp]	13.96	0.7749
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.005G126700 [exp]	16.00	0.7885
AT3G59890			Dihydrodipicolinate reductase,...		Potri.017G001900 [exp]	26.53	0.7268
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Potri.018G086700 [exp]	28.58	0.7183
AT1G19880			Regulator of chromosome conden...		Potri.002G025600 [exp]	32.86	0.7233
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.001G177700 [exp]	33.85	0.7694

Compare expression of checked genes

Potri.007G001500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.