Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78940 758 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT1G16760 751 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G24370 725 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 722 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 692 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 623 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 595 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 541 / 0 protein kinase family protein (.1) AT5G12000 488 / 1e-162 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 410 / 2e-132 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G001700 [exp] 1113 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 1110 / 0 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170901 [exp] 842 / 0 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G002400 [exp] 721 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 697 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 577 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 497 / 2e-165 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 480 / 8e-158 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G147000 [exp] 354 / 1e-110 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037298 [exp] 777 / 0 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10033340 [exp] 766 / 0 AT1G16760 800 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 719 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 692 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 675 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 662 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 583 / 0 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 542 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 537 / 0 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 532 / 1e-178 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G001900.1 pacid=42764834 polypeptide=Potri.007G001900.1.p locus=Potri.007G001900 ID=Potri.007G001900.1.v4.1 annot-version=v4.1 ATGTGGCTTTCAAAGGGACAGTGGAGCAGGAAGGGAGGAGAAGGAAAGGGGTTGGTGGCAGTTGCAGTGGACAAAGACAAAGGGAGCCAAAATGCATTGA AATGGACTATGGAAAATCTTCTCTCCAAAGGCCAAACTGTTGTTCTAATCCATGTTTTTAGCAAATCATCATCATCATCATCATCATCATCATTTGTTAC TAGCCACGGAGCAGCTGGTGATTATTTTTCACCAGGGAAGCAGCAGCTTGAGAAGATGGCCAAGGATCTCTTCCTTGCATTTCGATGCTATTGTACCCGT AAAGATGTGCGTTGCCTTGATGTTGCACTTGAAAGCACTGATATAGCAAAAGCAATAACAGAATATGTTGCCCATGCTGCAATCGAGACTTTGGTTCTCG GCACCCCGTCACGGAGTGGATTTATGAGAAAATTCAAGGCCGATGTCCCAAGCACTGTGTCAAGAGGGGCACCGGATTTCTGTACTGTGTATGCAGTCTC AAAAGGAAAGGTCTCTTCCATGAGAAATGCTTCTCGTGCCGCCCCATTTGTCTCCCCACTGCTAGATCAAATAAAAAACCAACAGAATGAAAAAAGTGCA GGAGACGACTCTCATGAAGCACTATACAAACATAGTTGGAGTATAAAACAGAGGACGGCGTCAGTCAACCATCACATCTCAGTTGATGAAAACTTCAGGT CACCGTTTGGAACAGGAAGATATGGTCATAGTGTAAGATCATTTGCAGATTTAATGTCAGAAACTGACATATCATTTGTAAGCTCAAGCAGGCCAAGCAC TGACCGCATGTCTTCTACAACCTATGATTTCATGGATTCTGGACTAGCCCCACGGCTTTCAACTAGTTCAGCAACTAGTTTTGCATCTATACATTCAGGA CCAAAGTCCATTGGCCCCAATTCCCAGCAGGGATTTTCATCAGTTTCACATGATAGTGGAGGAACGTCATTTTCCGGTTCAACACATAGCCTGGATGACA TGGAATCTGAGATGAGGAGGCTAAAACTAGAGCTGAAGCAAACAATGGAAATGTACAGTGAAGCATGTAGAGAAGCACTTACAGCAAAACAAAAGGCAAC GGAGCTGAATCGCTGGAGAATAGAAGAAGAACGAAGATTGGAAGAGGCAAGATTTTCTGAGGAAGCTGCACTATCAATTATAGAACAAGAGAAAGCCAGG TGCAGAGAAGCCATAGAAGCTGCTGAAACAGCTCAGAGGAGAGCAGAAATAGAAGCACAAAGGAGAGTCATCATAGAGAAAGCCCTCAAAGAAGCTGCAC AAACGAAGAAATCAAAGGGTAATCTATCCTATAATGATATCAGATACAGGAGATACTCAATTGAGGAGATTGAAGAAGCAACACAATACTTTTCGGAATC AAAGAAGATCGGGGAAGGAGGTTATGGCCCAGTTTACAAGTGTTATCTTGATCATACACCAGTTGCAGTCAAGGTTTTACGTCCTGATGCGGCCCAAGGA AGGTCACAATTTCAAAGAGAGGTTGAAGTGCTTAGCTTAATACGGCATCCAAACATGGTACTGCTTATAGGAGCCTGCCCAGAGTATGGCATTCTAGTCT ATGAACACTTGGCAAAAGGAAGCTTAGAAGATTGTCTTTTCAAGAGAGGGAATACCCCAGCTCTTTCTTGGCAAATCAGGTTTCGAATTGCAGCCGAGAT AGCCACAGGTCTACTCTTTCTTCATCAGACCAAGCCAGAGCCACTAGTGCACCGTGACCTAAAGCCAGGAAACATTTTGCTAGACAACAACTACACCAGT AAGATTGGGGATGTTGGATTGGCCAGGCTTGTTCCTGCTACAGCTGAGAATGTAACACAGTACTACATGACATCAGCTGCTGGAACTTTCTGCTATATTG ATCCAGAGTACCAACAAACTGGAATGCTTGGTGTGAAATCTGATGTATATTCCTTAGGGATCATGCTTCTGCAAATCATAACAGCCAGGCCACCAATGGG GTTGACTCACATTGTTGAACAAGCTATTGAAAATGGGGCATTCAAAGAAGTTCTAGACCCAGATGTGCCTGATTGGCCAGTTGAAGAGGCTTTAAGTTAT GCAAAGCTTGCACTCCAATGTGCAGAACTGAGACGGAAAGACAGGCCAGATCTTGGCACAGAAGTCTTGCCAGAGCTCAACAAACTGAGAGATTTGGCTG AAGAAAAGACGAACTACCTTTATTTCGCTGGCAGTTTCGGTCCTTATCCCAACCACAGCCAAGCTTCAATAACTCCCCCCCTCAGCCAAACTTCAATGAC TCCCACCAACCTCAGTCAATCTTCAGTAAATAAGGAAATGACGTGTGATTTCGTAGTTGAAAACCCATGA
AA sequence Show only first row Show all	>Potri.007G001900.1 pacid=42764834 polypeptide=Potri.007G001900.1.p locus=Potri.007G001900 ID=Potri.007G001900.1.v4.1 annot-version=v4.1 MWLSKGQWSRKGGEGKGLVAVAVDKDKGSQNALKWTMENLLSKGQTVVLIHVFSKSSSSSSSSSFVTSHGAAGDYFSPGKQQLEKMAKDLFLAFRCYCTR KDVRCLDVALESTDIAKAITEYVAHAAIETLVLGTPSRSGFMRKFKADVPSTVSRGAPDFCTVYAVSKGKVSSMRNASRAAPFVSPLLDQIKNQQNEKSA GDDSHEALYKHSWSIKQRTASVNHHISVDENFRSPFGTGRYGHSVRSFADLMSETDISFVSSSRPSTDRMSSTTYDFMDSGLAPRLSTSSATSFASIHSG PKSIGPNSQQGFSSVSHDSGGTSFSGSTHSLDDMESEMRRLKLELKQTMEMYSEACREALTAKQKATELNRWRIEEERRLEEARFSEEAALSIIEQEKAR CREAIEAAETAQRRAEIEAQRRVIIEKALKEAAQTKKSKGNLSYNDIRYRRYSIEEIEEATQYFSESKKIGEGGYGPVYKCYLDHTPVAVKVLRPDAAQG RSQFQREVEVLSLIRHPNMVLLIGACPEYGILVYEHLAKGSLEDCLFKRGNTPALSWQIRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDNNYTS KIGDVGLARLVPATAENVTQYYMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQIITARPPMGLTHIVEQAIENGAFKEVLDPDVPDWPVEEALSY AKLALQCAELRRKDRPDLGTEVLPELNKLRDLAEEKTNYLYFAGSFGPYPNHSQASITPPLSQTSMTPTNLSQSSVNKEMTCDFVVENP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78940			Protein kinase protein with ad...		Potri.007G001900 [exp]	0	1
AT2G27770			Plant protein of unknown funct...		Potri.004G187600 [exp]	2.23	0.8190
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.004G030600 [exp]	9.27	0.8073
AT5G08350			GRAM domain-containing protein...		Potri.005G088200 [exp]	13.07	0.8015
AT5G66440			unknown protein		Potri.005G120300 [exp]	17.14	0.7802
AT1G30080			Glycosyl hydrolase superfamily...		Potri.011G084900 [exp]	19.79	0.7940
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.017G016600 [exp]	20.37	0.7811
AT5G35670		IQD33	IQ-domain 33 (.1)		Potri.014G161000 [exp]	26.26	0.7770
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.005G071100 [exp]	27.92	0.7701
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Potri.015G093400 [exp]	30.03	0.7394
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Potri.011G095100 [exp]	31.03	0.7772	ATGSL04.1

Compare expression of checked genes

Potri.007G001900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.