Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20190 437 / 3e-145 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 412 / 3e-135 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 379 / 1e-122 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 370 / 2e-119 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 362 / 3e-116 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT5G16590 295 / 4e-91 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT5G53320 274 / 3e-83 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 268 / 7e-81 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 265 / 1e-79 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 259 / 2e-77 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002700 [exp] 1011 / 0 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 632 / 0 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 600 / 0 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 595 / 0 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 589 / 0 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 405 / 2e-133 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 313 / 1e-97 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 286 / 9e-88 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 273 / 1e-82 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026988 [exp] 561 / 0 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 502 / 6e-170 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 468 / 1e-159 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 452 / 8e-156 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 430 / 2e-142 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034795 [exp] 382 / 3e-126 AT3G20190 445 / 1e-150 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 388 / 5e-126 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 349 / 7e-111 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 345 / 1e-108 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010973 [exp] 293 / 3e-90 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G002000.1 pacid=42765263 polypeptide=Potri.007G002000.1.p locus=Potri.007G002000 ID=Potri.007G002000.1.v4.1 annot-version=v4.1 ATGGTAATGGCTGCGCACGTAGCTATGCTTGCGCGCGCAACCACCTCATCATTAGTCCTCCTTGTTCTTGCATTCGTGTTATCTATTGTGGTTACATCAT TTGGCTCACCAGATTCTGATGCCCTTTTAAAGTTCAAGGAACAGCTAGTGAACAATGAGGCTATTAGTAACTGGAATGTCTCAGTGAATCCATGCGAAAG GGATAGATCAAATTGGGTTGGTGTGCTTTGTTTCAATGGAGGCATTTGGGGTTTGCAGCTTGAACATATGGGACTCGCTGGCAATATTGATTTGGATGCA CTAGCTCCCTTGCCTTCCTTTCGAACGTTAAGCCTTATGGACAACAATTTTGATGGTCCATTGCCTGATTTCAAGAAACTGGGGAAGTTAAAAGCGTTGT ATTTGTCAAACAACCGATTCTCTGGAGACATTCCTGACAAAGCATTCGAAGGCATGGGTTCATTAAAGAGACTGTTTTTGGCAAATAACCTGCTTACAGG AAAGATTGCTTCATCACTTGCGATCTTGCCTAAGTTAACGGAATTGAAGCTTGATGGAAACCAATTTGAAGGCCAAATACCCAATTTTCAACAGAAGGGT ATGAAGACAGCAAATGTAGCCAACAATGAATTGGAGGGTCCAATCCCAGAAGCCCTGAGCAGATTGAGTCCAAACTCATTTGCAGGCAACAAAGGACTTT GTGGACCGCCTCTAGGACCATGCATACCCTCTCCACCTTCTACCCCTAAAGCCCATGGGAAGAAATTCAGCATTCTATATATTGTAATCATTATACTGAT TGTTCTGCTAATACTAGCAGCCATTGCTTTTGCTTTCCTTTTGTTTTCCCGAAAAGAAAGTAAAAGACGAACGCAGAGGAGAGCATCAGAGAACTCCAAC AGAATTATGTCTTCCTATTATAGAGATGTACATCGTGAAATGCCAGAGACTAATTCGCATTCAAGGATAACTGATCATGGAAAGTTGTCATTCCTGAAGG ATGACATTGAGAAATTTGATTTGCAAGACTTGCTTAGAGCATCAGCAGAAGTTTTGGGGAGTGGGACATATGGATCTTCATACAAAGCTGTCGTCGGTGG ACAACCTGTGGTTGTTAAGAGGTATCGGCATATGAACAATGTGGAGAGAGAAGAGTTTCATGAGCACATGAGAAGGATAGGGAGGTTGAAGCATCCAAAC TTGCTGCCTCTTGCGGCGTATTATTATAGGAGGGATGAGAAGCTTTTGGTTACCGTGTTTGCCGAGAATGGTAGCTTGGCTAGTCACCTTCATGGAAATC ATTCACTGGAAGAAGATGGACTTGATTGGCGTATCCGCTTGAAAATCGTCAAAGGAGTAGCCAGGGGCTTGGCTTTCCTCTACAATCAGCTTCCTATAAT TGCTCCTCATGGACACCTGAAATCTTCCAATGTGCTCCTCGACGAGTCATTTGAGCCTCTCTTGACAGATTATGCTCTAAGACCTGTGATCAACCCTGAA CATGCCCACGTGTTCATGATGGCTTACAAGTCGCCTGAGTATGCACAACATGGCCGGTCATCGAACAAGACAGATATATGGAGTTTTGGCATATTAATAC TGGAAATATTAACTGGCAAGTTCCCTGAGAACTATCTAACACCAGGGTATAATAGCGATGCAGACTTGGCAACTTGGGTTAATAACATGGTGAAGGAAAA GCGAACAAGTGAAGTGTTTGATAAGGAAATGCTGGGAACGAAAAATAGCAAGGGAGAAATGATAAAACTTCTGAAAATTGGATTGAGTTGTTGCGAACAG GAAGTTGAGAGAAGGTCGGACATTAAGGAAGTTGTCGACAAGATTGAGGAATTGAAAGAAGGAGATGATGATGAAGACTTTTACGGAAGTGAAGGGAATG CATGCAGTGTTAGAGGAAATAATCAAGAAGGTTTTTCTTTCACGTACGATCGATGA
AA sequence Show only first row Show all	>Potri.007G002000.1 pacid=42765263 polypeptide=Potri.007G002000.1.p locus=Potri.007G002000 ID=Potri.007G002000.1.v4.1 annot-version=v4.1 MVMAAHVAMLARATTSSLVLLVLAFVLSIVVTSFGSPDSDALLKFKEQLVNNEAISNWNVSVNPCERDRSNWVGVLCFNGGIWGLQLEHMGLAGNIDLDA LAPLPSFRTLSLMDNNFDGPLPDFKKLGKLKALYLSNNRFSGDIPDKAFEGMGSLKRLFLANNLLTGKIASSLAILPKLTELKLDGNQFEGQIPNFQQKG MKTANVANNELEGPIPEALSRLSPNSFAGNKGLCGPPLGPCIPSPPSTPKAHGKKFSILYIVIIILIVLLILAAIAFAFLLFSRKESKRRTQRRASENSN RIMSSYYRDVHREMPETNSHSRITDHGKLSFLKDDIEKFDLQDLLRASAEVLGSGTYGSSYKAVVGGQPVVVKRYRHMNNVEREEFHEHMRRIGRLKHPN LLPLAAYYYRRDEKLLVTVFAENGSLASHLHGNHSLEEDGLDWRIRLKIVKGVARGLAFLYNQLPIIAPHGHLKSSNVLLDESFEPLLTDYALRPVINPE HAHVFMMAYKSPEYAQHGRSSNKTDIWSFGILILEILTGKFPENYLTPGYNSDADLATWVNNMVKEKRTSEVFDKEMLGTKNSKGEMIKLLKIGLSCCEQ EVERRSDIKEVVDKIEELKEGDDDEDFYGSEGNACSVRGNNQEGFSFTYDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20190			Leucine-rich repeat protein ki...		Potri.007G002000 [exp]	0	1
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.019G081300 [exp]	12.00	0.9180
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Potri.009G061700 [exp]	18.43	0.8956	HF.2
					Potri.018G120450 [exp]	21.26	0.8484
					Potri.008G135001 [exp]	26.15	0.8946
AT5G61340			unknown protein		Potri.012G068000 [exp]	27.27	0.8137
AT4G36490		ATSFH12	SEC14-like 12 (.1)		Potri.007G020300 [exp]	29.73	0.8917	Pt-LJPLP.1
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.009G138600 [exp]	35.49	0.8870
					Potri.007G040950 [exp]	42.33	0.8848
AT1G01800			NAD(P)-binding Rossmann-fold s...		Potri.002G156750 [exp]	44.36	0.8843
AT1G30870			Peroxidase superfamily protein...		Potri.010G175100 [exp]	48.00	0.8842

Compare expression of checked genes

Potri.007G002000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.