Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07050 1187 / 0 CAS1 cycloartenol synthase 1 (.1) AT3G45130 964 / 0 LAS1 lanosterol synthase 1 (.1) AT1G78955 871 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78960 847 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G78950 842 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G78970 811 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G66960 801 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78500 753 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT5G36150 743 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT4G15370 725 / 0 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G079300 [exp] 1217 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.018G148800 [exp] 1216 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.006G079200 [exp] 1084 / 0 AT2G07050 1116 / 0.0 cycloartenol synthase 1 (.1) Potri.014G002400 [exp] 879 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 878 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.004G132500 [exp] 847 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 842 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 834 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.001G049100 [exp] 820 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032146 [exp] 1208 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10014538 [exp] 1203 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10025684 [exp] 1070 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10013546 [exp] 818 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10008544 [exp] 811 / 0 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1) Lus10016441 [exp] 800 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10026079 [exp] 771 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10033355 [exp] 760 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10016439 [exp] 649 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10016440 [exp] 643 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00432 [poplar] [flax] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Potri.007G002200.1 pacid=42764917 polypeptide=Potri.007G002200.1.p locus=Potri.007G002200 ID=Potri.007G002200.1.v4.1 annot-version=v4.1 ATGTGGAAGCTTACGATAGGAGCAGAGAGTGTTCATGACAATGGCCAATCATCATCATGGCTTAAAAGTGTTAACAATCATCTGGGTCGCCAAGTTTGGG AATTTTGCCCACAACTTGGCTCCCCAGATGAGCTTTTGCAATTACAAAATGTTCGCCTTTCATTTCAAGCTCAAAGGTTTGACAAAAAACACAGCGCTGA CCTTCTTATGAGGTTTCAGTTTGAAAAGGAGAACCCATGTGTGAATTTGCCTCAAATTAAAGTTAAAGACGATGAAGATGTGACTGAGGAAGCAGTGACT ACTACCTTGAGAAGGGCTGTTAATTTTTATAGGAAAATTCAGGCGCATGATGGTCATTGGCCTGGTGATTATGGAGGTCCTATGTTTCTACTTCCTGGTT TGATCATTACCTTATCTATTACGGGAGCTCTGAATGCTGTCTTGTCAAAAGAACATCAGCGAGAGATGTGCAGATATCTGTACAATCATCAGAATAGAGA TGGGGGTTGGGGTCTTCATATTGAAGGCCCAAGCACCATGTTTGGTACTTGTCTAAACTATGTGACCTTGAGGTTACTTGGTGAAGGAGCTGAGGGTGGT GATGGGGAAATGGAAAAGGGACGTAAGTGGATCTTGGACCATGGTGGTGCAACTGAGATTACTTCGTGGGGGAAAATGTGGCTTTCGGTACTTGGAGTCC ATGAATGGTCTGGGAATAATCCACTGCCTCCAGAAGTATGGCTATGTCCTTACCTTCTCCCAATGCATCCAGGAAGGATGTGGTGCCACTGTCGTATGGT GTATTTACCAATGTCTTATCTATATGGGAAGAGGTTTGTTGGTCCTATAACACCCACAATTCAATCTTTGAGAAAGGAGATCTACACTGTTCCATATCAT GAAGTAGATTGGAATACAGCTCGTAATACATGTGCAAAGGAAGATCTATACTACCCTCATCCTTTGGTTCAGGATATTCTGTGGGCTTCTCTTCACTATG CATATGAGCCTATACTTACACGTTGGCCTCTTAATAGGTTGAGAGAGAAGGCTTTGCACAAAGTGATGCAGCATATCCACTATGAAGATGAAAATACACA GTACATATGCATAGGTCCGGTCAACAAGGTATTGAATATGCTTTGTTGTTGGGTAGAAGATCCACACTCAGAGGCATTTAAACTGCATCTGCCAAGAGTA TTTGACTATTTGTGGATTGCTGAAGACGGAATGAAAATGCAGGGATATAATGGAAGTCAGTTGTGGGATACTGCTTTTGCTGTTCAAGCAATTGTCTCTA CCAACCTTGCTGAAGAATATAGTGGAACCTTGAGAAAAGCACACAAGTACCTTAAAGATTCACAGGTCCTAGAAGATTGTCCTGGAGATTTAAATTTTTG GTATCGCCACATCTCTAAAGGAGCTTGGCCATTTTCAACTGCAGATCATGGGTGGCCCATCTCCGACTGCACTGCAGAAGGATTGAAGGCTGTTTTACTA CTATCAAAACTTCCAACCGAAATGGTTGGGGATCCCTTAGGTGTGGAGAGGCTCCGTGATGCTGTAAATGTAATCCTTTCTTTACAGAATGCTGATGGTG GTTTTGCAACATATGAATTGACAAGATCGTACCAGTGGTTGGAGTTAATCAATCCTGCAGAAACTTTTGGTGACATTGTCATTGATTACCCATATGTAGA ATGCACATCAGCGGCAATCCAAGCACTAGCATCATTCAAGAAATTGTATCCTGGTCATAGGAGGGAAGAAATAGATAATTGTATTGCAGAAGCTGCAAAC TTCATTGAAAAGATTCAAGCGACAGATGGTTCCTGGTATGGATCCTGGGGAGTCTGCTTCACCTATGCTGGGTGGTTTGGGATAAAGGGCTTGGTGGCAG CTGGCATGACATATAATAGCTCCAGCAGTATCCGTAAAGCTTGTGATTATATGTTGTCCAAAGAACTTGCTGGAGGTGGTTGGGGAGAGAGTTATCTATC ATGTCAAAACAAGGTGTATACGAATCTGAAAGATGACAGACCACATATAGTCAACACTGGATGGGCTATGTTAGCACTCATTGAAGCTGGGCAGGCTGAG AGGGATCCAATACCATTGCACCGCGCCGCAAGGGTGTTAATAAACTCTCAAATGGAGAATGGAGATTTTCCTCAAGAGGAGATCATGGGAGTCTTCAACA AGAATTGTATGATCAGCTATTCAGCATACCGGAACATTTTCCCTATATGGGCCCTTGGAGAATATCGTTGCCAGGTACTGCAGGCTCTTTGA
AA sequence Show only first row Show all	>Potri.007G002200.1 pacid=42764917 polypeptide=Potri.007G002200.1.p locus=Potri.007G002200 ID=Potri.007G002200.1.v4.1 annot-version=v4.1 MWKLTIGAESVHDNGQSSSWLKSVNNHLGRQVWEFCPQLGSPDELLQLQNVRLSFQAQRFDKKHSADLLMRFQFEKENPCVNLPQIKVKDDEDVTEEAVT TTLRRAVNFYRKIQAHDGHWPGDYGGPMFLLPGLIITLSITGALNAVLSKEHQREMCRYLYNHQNRDGGWGLHIEGPSTMFGTCLNYVTLRLLGEGAEGG DGEMEKGRKWILDHGGATEITSWGKMWLSVLGVHEWSGNNPLPPEVWLCPYLLPMHPGRMWCHCRMVYLPMSYLYGKRFVGPITPTIQSLRKEIYTVPYH EVDWNTARNTCAKEDLYYPHPLVQDILWASLHYAYEPILTRWPLNRLREKALHKVMQHIHYEDENTQYICIGPVNKVLNMLCCWVEDPHSEAFKLHLPRV FDYLWIAEDGMKMQGYNGSQLWDTAFAVQAIVSTNLAEEYSGTLRKAHKYLKDSQVLEDCPGDLNFWYRHISKGAWPFSTADHGWPISDCTAEGLKAVLL LSKLPTEMVGDPLGVERLRDAVNVILSLQNADGGFATYELTRSYQWLELINPAETFGDIVIDYPYVECTSAAIQALASFKKLYPGHRREEIDNCIAEAAN FIEKIQATDGSWYGSWGVCFTYAGWFGIKGLVAAGMTYNSSSSIRKACDYMLSKELAGGGWGESYLSCQNKVYTNLKDDRPHIVNTGWAMLALIEAGQAE RDPIPLHRAARVLINSQMENGDFPQEEIMGVFNKNCMISYSAYRNIFPIWALGEYRCQVLQAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.007G002200 [exp]	0	1
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.006G025900 [exp]	3.00	0.8178	AGO913
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Potri.015G066000 [exp]	6.16	0.8251	HA2.2
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G009900 [exp]	15.81	0.8144
AT5G19740			Peptidase M28 family protein (...		Potri.006G153300 [exp]	16.67	0.7252
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	18.97	0.7708	ARF6.4
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.001G104900 [exp]	19.62	0.7679
AT2G30480			unknown protein		Potri.013G157800 [exp]	25.63	0.8061
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.005G130700 [exp]	31.74	0.7241
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.003G030000 [exp]	35.41	0.7485
AT2G27150		AtAAO3, At-AO3,...	Arabidopsis thaliana aldehyde ...		Potri.004G191300 [exp]	35.46	0.7446	Pt-AAO3.3,AAO2

Compare expression of checked genes

Potri.007G002200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.