Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78950 1245 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G78955 1224 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78960 1187 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G78970 1135 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G66960 1133 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78500 976 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT5G36150 976 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT4G15340 974 / 0 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1) AT5G48010 972 / 0 AtTHAS1, THAS1, THAS, ATPEN4 Arabidopsis thaliana thalianol synthase 1, thalianol synthase 1 (.1.2) AT4G15370 969 / 0 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002400 [exp] 1474 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 1191 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 1159 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G001500 [exp] 1144 / 0 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.014G002500 [exp] 996 / 0 AT1G78955 909 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 967 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 957 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.006G079300 [exp] 939 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.018G148800 [exp] 937 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013546 [exp] 1152 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 1130 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10026079 [exp] 1036 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10033355 [exp] 994 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10032146 [exp] 951 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10016439 [exp] 948 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10014538 [exp] 944 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10016440 [exp] 910 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1) Lus10025684 [exp] 823 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10008544 [exp] 738 / 0 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00432 [poplar] [flax] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Potri.007G002500.3 pacid=42766376 polypeptide=Potri.007G002500.3.p locus=Potri.007G002500 ID=Potri.007G002500.3.v4.1 annot-version=v4.1 ATGTGGAGGCTAAAGATTGCGGAAGGTGTGAGCAGCAATGAGTTGTATAGCACAAATAAGTTTGTAGGGAGGCAGACATGGGAGTATGATCCTCACGGTG GAAGTCCTGAGGAGAGAGCTGAGGTTGAAGAAGCTCGTCTCAGTTTCTACAACAACCGTTATCATGTCAAGCCCAGCGGCGACCTCCTCTGGCGTATGCA GTTTCTCAAGGAGAAAAACTTTAAGCAAAAAATACCGCAAGTGATAATTGAAGATGGCGAGGAGATCACATATGAAAAGGCAACAAATGCATTGAAGAGG GCTGTCCACTTCTTTTCAGCTCTACAGGCTAGTGATGGCCACTGGCCTGCTGAAAATGCTGGCCCCTTGTTCTTCCTCCCTCCCTTGGTAATGTGTCTGT ACATTACAGGACATCTAGATTCTGTATTCTCTGTTGAGCATCGTAGGGAAATCCTCCGTTACATCTATTATCATCAGAATGAAGATGGTGGTTGGGGACT CCACATTGAGGGTCACAGCACCATGTTCTGCACAGTTCTCAGCTACATTTGTATGCGAATTCTCGGGGAAGGACCCAGTGGTGGTCAAGACAATGCTTGT GCCAGAGCCCGGAAATGGATTCATGATCATGGTACTGCAACACACATACCCTCTTGGGGAAAGACTTGGCTCTCGATACTTGGTGTATTTGATTGGTCTG GAAGTAATCCGATGCCCCCAGAATTTTGGCTCCTTCCCTCTTTTCTTCCTATGCATCCAGCGAAAATGTGGTGCTATTGTCGGATGGTTTACATGCCAAT GTCGTATCTATATGGGAAAAGGTTCGTTGGTCCTGTTACACCTCTCGTTCTACAGTTGAGAGAAGAACTCTTTGCTGAACCTTATGGTCAAGTCAATTGG AGGAAAACGCGTCATCTGTGTGCTGCGGAGGATCTCTACTATCCCCATCCTTTGATTCAAGATCTGGTATGGGATAGTCTCTATGTATTCACCGAACCTT TTCTTACTCGTTGGCCCTTCCACAAGTTAGTAAGAAAGAAGGCTCTTGAAGTAACAATGAAGCACATTCACTATGAAGATGAAAACAGTCGTTACATTAC AATCGGATGTGTGGAAAAGGTGTTATGCATGCTTGCTTGCTGGGTTGAAGATCCCGATGGCGATTATTTCAAGAAACATCTCGCTAGGATCCCCGATTAT TTATGGGTGGCTGAAGATGGAATGAAAATGCAGAGTTTTGGAAGTCAGCAATGGGATACTGGTTTTGCCATTCAGGCCTTGCTTGCTAGTAATTTTACGG ATGAAATCATAGACGTACTCAAGAGAGGACATGACTTCATAAAGAAATCTCAGGTCAAGGACAATCCTTCCGGTGACTTTAAGAGCATGTACCGGCATAT TTCTAAGGGATCCTGGACTTTCTCTGATCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGATTGAAGTGCTGCCTACTTTTCTCAATGATG CCACCAGAAATTGTTGGCGAGCAACTCGAGCCTGAGCGGCTTTTCGATTCTGTCAATGTTCTTCTTTCTCTACAAAGTGAAAATGGAGGTTTAGCGGCGT GGGAGCCAGCTGGAGCTCAGAAGTGGTTGGAACTACTGAATCCTACAGAGTTTTTTGCTGACATTGTCGTTGAGCATGAATATGTTGAGTGCACTGCATC AGCAATCCAAGCGTTATTATTGTTCAAGAATTTGTACCCTGGTCACCGGAAGAAGGAGATCGATAATTTTGTAACAAATGCTGCACGATACCTCGAAAGC ATACAAACTCCAGAGGGCGGATGGTATGGAAACTGGGGAGTTTGCTTCACTTATGGTACATGGTTTGCACTTGGAGGCCTAGCAGCTGCTGGCAAGACTT ACAGCACCTGCACAGCTATGCGCCAAGGTGTTAATTTTCTTCTCAACATACAAAAAGATGATGGAGGTTGGGGAGAGAGCTATCTTTCATGCCCTAAGAA GAAATATGTACCTCTTGAAGGAAATCGATCGAATTTGGTACATACTGCATGGGCAATGATGGGTCTGATTCATGCTGGGCAGATGGATAGAGACTCTGCA CCTCTTCACCGAGCAGCGAAGCTTATAATCAATTCGCAATTGGAAGATGGTGATTTCCCTCAACAGGAAATCACTGGTGTGTTCATGAAAAACTGCATGC TACATTATGCAGCATACAGAAATATCTATCCATTGTGGGCTCTTGCGGAATACCAGAGGCGTGTTCTTCTGCCTTCGAAATAA
AA sequence Show only first row Show all	>Potri.007G002500.3 pacid=42766376 polypeptide=Potri.007G002500.3.p locus=Potri.007G002500 ID=Potri.007G002500.3.v4.1 annot-version=v4.1 MWRLKIAEGVSSNELYSTNKFVGRQTWEYDPHGGSPEERAEVEEARLSFYNNRYHVKPSGDLLWRMQFLKEKNFKQKIPQVIIEDGEEITYEKATNALKR AVHFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLDSVFSVEHRREILRYIYYHQNEDGGWGLHIEGHSTMFCTVLSYICMRILGEGPSGGQDNAC ARARKWIHDHGTATHIPSWGKTWLSILGVFDWSGSNPMPPEFWLLPSFLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPVTPLVLQLREELFAEPYGQVNW RKTRHLCAAEDLYYPHPLIQDLVWDSLYVFTEPFLTRWPFHKLVRKKALEVTMKHIHYEDENSRYITIGCVEKVLCMLACWVEDPDGDYFKKHLARIPDY LWVAEDGMKMQSFGSQQWDTGFAIQALLASNFTDEIIDVLKRGHDFIKKSQVKDNPSGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSMM PPEIVGEQLEPERLFDSVNVLLSLQSENGGLAAWEPAGAQKWLELLNPTEFFADIVVEHEYVECTASAIQALLLFKNLYPGHRKKEIDNFVTNAARYLES IQTPEGGWYGNWGVCFTYGTWFALGGLAAAGKTYSTCTAMRQGVNFLLNIQKDDGGWGESYLSCPKKKYVPLEGNRSNLVHTAWAMMGLIHAGQMDRDSA PLHRAAKLIINSQLEDGDFPQQEITGVFMKNCMLHYAAYRNIYPLWALAEYQRRVLLPSK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.007G002500 [exp]	0	1
AT5G56460			Protein kinase superfamily pro...		Potri.003G222600 [exp]	1.41	0.6694
AT1G15860			Domain of unknown function (DU...		Potri.003G180300 [exp]	1.41	0.6579
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.007G057600 [exp]	5.74	0.6285	CPK16,Pt-CPK16.1
AT3G12560		ATTBP2, TRFL9	TELOMERIC DNA-BINDING PROTEIN ...		Potri.010G202400 [exp]	9.16	0.5960
AT3G03160			unknown protein		Potri.015G035400 [exp]	12.96	0.6206
AT4G39140			RING/U-box superfamily protein...		Potri.004G158400 [exp]	13.85	0.6189
AT1G08800			Protein of unknown function, D...		Potri.019G012200 [exp]	14.07	0.6211
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017500 [exp]	17.08	0.6250	GLT1.2
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.019G050000 [exp]	20.39	0.5871
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.010G194300 [exp]	20.49	0.5801	Pt-SYP81.2

Compare expression of checked genes

Potri.007G002500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.