Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78980 500 / 8e-169 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 429 / 2e-141 SRF4 STRUBBELIG-receptor family 4 (.1) AT1G53730 396 / 2e-128 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 391 / 8e-127 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT4G22130 366 / 8e-119 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT4G03390 314 / 2e-96 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 304 / 9e-93 SRF1 STRUBBELIG-receptor family 1 (.1) AT1G11130 299 / 6e-91 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT5G06820 256 / 3e-75 SRF2 STRUBBELIG-receptor family 2 (.1) AT3G20530 237 / 1e-71 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G001200 [exp] 1045 / 0 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.001G161600 [exp] 427 / 1e-140 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 423 / 7e-139 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.004G005301 [exp] 385 / 3e-124 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.011G010500 [exp] 384 / 2e-123 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.019G103900 [exp] 324 / 5e-100 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 312 / 9e-96 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 311 / 2e-95 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 310 / 3e-95 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035703 [exp] 718 / 0 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10033333 [exp] 538 / 0 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10034790 [exp] 533 / 0 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10037294 [exp] 489 / 5e-167 AT1G78980 525 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10037464 [exp] 434 / 2e-143 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10003926 [exp] 432 / 3e-142 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10015549 [exp] 377 / 5e-119 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 352 / 1e-111 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10018459 [exp] 324 / 3e-101 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10039795 [exp] 315 / 6e-97 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.007G002600.1 pacid=42766015 polypeptide=Potri.007G002600.1.p locus=Potri.007G002600 ID=Potri.007G002600.1.v4.1 annot-version=v4.1 ATGTTTTGGTGTAGGAGAATGTACCATAGTCTTTTAGGGTTCTTGATTGTCTCTCTTGTAATCCTCACCACCTTGGTCCATTCGAAGACTGATTCTGAAG ATGTTTCGGCTTTGAATGTGATGTTTACGAGCTTAAACTCTCCTTCAAAACTGAGTGGATGGCAATCAAGTGGTGGGGACCCTTGTGGAGACTCTTGGGA AGGAATCCAGTGCTCAGGCTCATCTGTGACTCAAATAAAATTATCTGGACTTGGACTTACTGGATCACTGGGTTATCAGCTGTCAAACTTGAAATCTGTC ACCTACTTTGATGTGAGCAAGAACAACCTCAAGAATGATATACCATACCAGCTTCCTCCTAATGCAGCTACCTTAGATCTTTCTAATAATGGCTTCACTG GCAGTGTGCCCTACTCAATTTCACAAATGACTAAACTTCAAAACCTAAATCTTAATCAAAATAAATTAAATGGACAGTTGAGTGATATGTTTCAGAAACT CTCTAAACTTAAAACACTGGATCTATCCCACAACTCGATCTCAGGGAATCTGCCTCAGAGTTTTTCTGCACTTTCAAGCCTCAGCACATTGCATTTGCAA GACAATGAATTCACCGGTACCATAGATGTCCTTGCCAGACTTCCCCTTAAAGATTTGAATATTAAAGACAATGAGTTCACTGGTTGGGTCCCTGATTCGC TGAATGGCATTGATAATCTGGAAACGGGCGGGAATGCGTGGTCATCTGGTCCGGCTCCTCGTGGTAAATCTAGTTCAGCCCATGGCAAGGGAAGTGGGAA AGGTGGCATGAATGGACTTGCTATAGCGTTAATAGTTTTGGCTTCACTGGTAGTAGTTGGACTCCTCATTATACTGCTTTCAAAAAGAAGGTCTTCTCCA TCTTCAAATTTTCTTGAGGAAGATAATGGTAGCTGGCATAGAGCATTTACTCCCCTTTCATCACATGAACTATCCAATGACACTCGTGCTGCCATAAAGA AAGAGTTTAAAGAAATTGAACCAATCAATTTGTCTGGTTCGATTGATATAAAGAATCTGCAAAAAGCTCCTTCCGTGGGTTACAAGCCTCCACCTTCTGA TTTTTCTGAGTCTATAAGTGACAACGAGTTTGCCATCCGTCTAAATGCTGGAAGAAACACCTCTGTTCGTTCCATAGCTTTTTCCTTGACAGATTTGCAG ACTGCTACTGGCAATTTTGCATCGGGCCGACTTATTGGTGAGGGATCCCTCGGTCCTGTTTACAGGGCTAAATATCCTGATGGGAAGGTTTTAGCTGTCA AAAAGATTGATTCATCACTTTTTCAAGGCGCAAAGCAAGAGTTTTCAGAAATTGCTACAAGCATCTCAAAAGTTCACCATCAGAACATTGCTGAGCTTGT TGGTTATTGTTCAGAACAAGGGCACAGCATGTTGATATACGAGTATTTCAGGAATGGCTCACTTCATGAATTCCTGCATGTGTCAGATGACTACAGTAAA CCACTAACTTGGAATACCAGAGTTAGAATAGCTTTGGGCACGGCACGTGCTGTCGAGTACCTCCATGAAGTTTGTTCTCCATCCTTCATCCATAAGAACA TCAAGTCATCTAACATTTTGCTTGACCTTGAGCTCAATCCATGTCTTTGCGACTACGGGCTGGCAAACTTCCATCATCGGACAAGCCAAAACCTTGGTGC AGGATACAATGCTCCAGAGTGCACTAAGCCGTCAGCTTATACAATGAAGAGTGATGTTTACAGTTTTGGAGTGGTGATGCTGGAGTTATTGACTGGTAGG CAGCCTTTTGACAGTTCAAAACCGAAATCAGAACAATGTCTGGTTCGATGGGCCACCCCTCAACTACATGACATTGATGCGTTGGACAAAATGGTAGACC CTGCATTGCGCGGGCTATACCCTCCAAAGTCTGTTTCTCGATTTGCTGATATCATTTCCCTCTGTGCACAGGTGGAGCCTGAATTCCGGCCGCCTATGTC AGAGATAGTGCAAGCATTGGTGCGATTATTTCAGTGA
AA sequence Show only first row Show all	>Potri.007G002600.1 pacid=42766015 polypeptide=Potri.007G002600.1.p locus=Potri.007G002600 ID=Potri.007G002600.1.v4.1 annot-version=v4.1 MFWCRRMYHSLLGFLIVSLVILTTLVHSKTDSEDVSALNVMFTSLNSPSKLSGWQSSGGDPCGDSWEGIQCSGSSVTQIKLSGLGLTGSLGYQLSNLKSV TYFDVSKNNLKNDIPYQLPPNAATLDLSNNGFTGSVPYSISQMTKLQNLNLNQNKLNGQLSDMFQKLSKLKTLDLSHNSISGNLPQSFSALSSLSTLHLQ DNEFTGTIDVLARLPLKDLNIKDNEFTGWVPDSLNGIDNLETGGNAWSSGPAPRGKSSSAHGKGSGKGGMNGLAIALIVLASLVVVGLLIILLSKRRSSP SSNFLEEDNGSWHRAFTPLSSHELSNDTRAAIKKEFKEIEPINLSGSIDIKNLQKAPSVGYKPPPSDFSESISDNEFAIRLNAGRNTSVRSIAFSLTDLQ TATGNFASGRLIGEGSLGPVYRAKYPDGKVLAVKKIDSSLFQGAKQEFSEIATSISKVHHQNIAELVGYCSEQGHSMLIYEYFRNGSLHEFLHVSDDYSK PLTWNTRVRIALGTARAVEYLHEVCSPSFIHKNIKSSNILLDLELNPCLCDYGLANFHHRTSQNLGAGYNAPECTKPSAYTMKSDVYSFGVVMLELLTGR QPFDSSKPKSEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIISLCAQVEPEFRPPMSEIVQALVRLFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.007G002600 [exp]	0	1
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Potri.003G183000 [exp]	2.23	0.9163
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Potri.002G057800 [exp]	5.47	0.9038	Pt-VCL1.3
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.003G058200 [exp]	8.12	0.8952
AT2G26770		SCAB1	stomatal closure-related actin...		Potri.001G272300 [exp]	8.36	0.8450
AT1G20670			DNA-binding bromodomain-contai...		Potri.016G141400 [exp]	11.40	0.8676
AT3G12180			Cornichon family protein (.1)		Potri.016G051000 [exp]	12.04	0.8885
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	13.41	0.8888
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.012G127800 [exp]	17.49	0.8782
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124200 [exp]	18.49	0.8118
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069950 [exp]	20.07	0.8498

Compare expression of checked genes

Potri.007G002600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.