Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13060 733 / 0 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT3G13460 367 / 1e-117 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT1G55500 352 / 7e-113 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT1G27960 322 / 6e-102 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT5G58190 302 / 9e-95 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT3G17330 298 / 2e-93 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT5G61020 295 / 2e-92 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT1G79270 277 / 3e-85 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT1G48110 279 / 1e-84 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT3G03950 267 / 1e-82 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G001000 [exp] 1184 / 0 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G056100 [exp] 550 / 0 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.006G079900 [exp] 456 / 1e-152 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.018G149800 [exp] 452 / 3e-151 AT5G58190 417 / 3e-139 evolutionarily conserved C-terminal region 10 (.1.2) Potri.003G222700 [exp] 365 / 1e-117 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.001G002000 [exp] 355 / 5e-114 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.019G034300 [exp] 310 / 3e-97 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.010G175500 [exp] 310 / 6e-97 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.008G100200 [exp] 309 / 5e-95 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033335 [exp] 865 / 0 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10034792 [exp] 839 / 0 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10037028 [exp] 484 / 3e-164 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2) Lus10027582 [exp] 399 / 5e-131 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10015778 [exp] 377 / 5e-126 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2) Lus10002624 [exp] 323 / 5e-102 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 325 / 4e-101 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10017111 [exp] 296 / 2e-90 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10018343 [exp] 290 / 3e-88 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10037364 [exp] 278 / 8e-85 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF04146 [poplar] [flax] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Potri.007G002800.5 pacid=42766602 polypeptide=Potri.007G002800.5.p locus=Potri.007G002800 ID=Potri.007G002800.5.v4.1 annot-version=v4.1 ATGGCGGCAACCCAATCACCATCACAACCTGCTCCAGATCGTGTCCCTGCTGACTCTACTAAGTCACTGAGCTTACTGATCATGGATGCAGAAGAGAAAC CTGCCGAATCAGATAACATGAAGGAGCAGCCTCTATCAGCAAAAAATGAGACGTCAGTTTCTCCTAATTCCTCACAGGATACTGCCCCTTCAGGTCATCC TAGGGACACCACAGGTCAATTGGGAGCATTTGGTTCTCCTGGAGATCGTGCTGTCTATCCACCTAATATTTATGCTCCTCAGGCACAGGCGTTCTACTAC AGAGGTTATGACAATGTCACTGGTGAATGGGATGAATATCCTCCATATATAAATGCTGAAGGTTTAGAAATTGGGTCTCCTGGTGTCTACAATGACAATC CTTCTCTTGTTTTCCATGCTGGATATGGATATAGTCCACAAATGCCTTATGGGCCATATTCTCCAGTCACCACTCCTTTACCTTCTGTCGGTGGAGATGC ACAGTTATACTCCCCTCAGCAATTTCCATTTTCTGGGCCACCTTATTACCAGCATCTAGGTCCTAACATGTCATATATCACTTCACCAACACCAGTTTCA CAACCGGAGTTCAACGCATTGGCAAACATCGACCAACAAGGAGATAACATGCTTTTCGGACCAAGGCCTAGTTATCCTCCTCCAGTAGGATCAATTGGTA GGGGCAGCTTTCCAGGAAACCATGGTTTTCATGATCAGCAGCAGGGGTTCGACGGATTGAGATCTGGAGGACTTTGGTCAGATTGGTCAAAGCCCTCAGA TAGAAATAGGCCTTTGACTCCCTTTTCACCTTCAGTTTCCCCACAGCCTATTGGCAATTTTGTGTCATTTGGGCAGAATGTTGGAATGGCATCTCAACAA CAAAGATCATTTTATGGCCCTGGATCTGGTTCAAACTCCTACAATAGAGCCTATCTGCAGAGTGGTTACAATCAGGGATCTAGTTTTGGAAGTGCATCCA TTTCTAGTTTGGGGACTAACAATCGGGGTTGGCTTTCTCTTGAAAACAACAGACGGCGAGGAAGGAGCAATGTTTCCTTATGTGGCTGCAATGGTAGTCT TGATATCCTTAGTGAGCAAAACAGAGGACCAAGGGCCTTAAAGCCTAAGGCCCAAAATACAGCTGAACATGGTCCTTCTGTTGAGAATAATAAACATAGC AAACCATCTGCCAAGATCCATGACGAATCATACAACCAACCAGATTTTGTAATTGAATACAAGGATGCTAAGTTCTTCATCATCAAGTCATACAGTGAAG ATAACGTTCACAAGAGCATCAAATATGGTGTTTGGGCCAGCACTCCAAATGGGAATAGAAAATTGGACACCACCTATCGTGAAGCTAAGGAGAAGCAAGA TCCTTGTCCTGTGTTTCTCTTATTTTCGGTGAATGCTAGTGCCCAGTTTTGTGGAGTGGCTGAAATGACTGGACCTGTTGACTTTGACAAGAGTGTGGAT TACTGGCAGCAGGACAAGTGGAGCGGGCAGTTCCCTGTCAAATGGCACATTATTAAAGATGTCCCAAACAGTCAGTTTCGTCACATTGTATTGGAAAATA ATGACAACAAGCCTGTCACTAACAGTCGAGACACACAGGAGGTGAAATTGGAGCAGGGCATTGAGATGTTGAACATCTTTAAGAATTACGAAACTGATAT GTCAATCATAGATGATTTTGATTTTTATGAGGACCGACAGAAAGCCATGCAAGAAAGGAAGGCTAGACAGCAAGCCAGCCTGATGGCTGTAGGTGTAGTT GGAGAAAGTGAGCACAGAAATGCAGTTACCTTACCAACTGATATTATCAAGCAGATGACGAAGAGTTTTGCTCAAGTTGTCTGCCTGGATGAGTCTAGCA AAGAAGGCACTGTTACTGATAGGGTTAGTTCTGGCTCTGATGGTTCTGCGGGCGCTAGAGTTAAATTGGAAGATGGTATCACAACCGTCTCCCCCTCGCA GACCAGTTAG
AA sequence Show only first row Show all	>Potri.007G002800.5 pacid=42766602 polypeptide=Potri.007G002800.5.p locus=Potri.007G002800 ID=Potri.007G002800.5.v4.1 annot-version=v4.1 MAATQSPSQPAPDRVPADSTKSLSLLIMDAEEKPAESDNMKEQPLSAKNETSVSPNSSQDTAPSGHPRDTTGQLGAFGSPGDRAVYPPNIYAPQAQAFYY RGYDNVTGEWDEYPPYINAEGLEIGSPGVYNDNPSLVFHAGYGYSPQMPYGPYSPVTTPLPSVGGDAQLYSPQQFPFSGPPYYQHLGPNMSYITSPTPVS QPEFNALANIDQQGDNMLFGPRPSYPPPVGSIGRGSFPGNHGFHDQQQGFDGLRSGGLWSDWSKPSDRNRPLTPFSPSVSPQPIGNFVSFGQNVGMASQQ QRSFYGPGSGSNSYNRAYLQSGYNQGSSFGSASISSLGTNNRGWLSLENNRRRGRSNVSLCGCNGSLDILSEQNRGPRALKPKAQNTAEHGPSVENNKHS KPSAKIHDESYNQPDFVIEYKDAKFFIIKSYSEDNVHKSIKYGVWASTPNGNRKLDTTYREAKEKQDPCPVFLLFSVNASAQFCGVAEMTGPVDFDKSVD YWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLEQGIEMLNIFKNYETDMSIIDDFDFYEDRQKAMQERKARQQASLMAVGVV GESEHRNAVTLPTDIIKQMTKSFAQVVCLDESSKEGTVTDRVSSGSDGSAGARVKLEDGITTVSPSQTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.007G002800 [exp]	0	1
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Potri.015G090200 [exp]	6.63	0.8847	ELF5.2
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.014G128300 [exp]	9.79	0.8813
AT1G29350			Kinase-related protein of unkn...		Potri.001G353100 [exp]	9.79	0.8526
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Potri.018G076200 [exp]	11.13	0.8445
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	12.48	0.8722
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	12.60	0.8738
AT2G36480			ENTH/VHS family protein (.1.2....		Potri.006G115600 [exp]	14.66	0.8703
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.010G186200 [exp]	14.96	0.8643
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	16.24	0.8592
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	17.49	0.8665

Compare expression of checked genes

Potri.007G002800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.