Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13050 555 / 0 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT3G20660 96 / 1e-20 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT2G16130 90 / 8e-19 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G16120 75 / 4e-14 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT1G73220 70 / 2e-12 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT3G18830 66 / 4e-11 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT1G16370 65 / 6e-11 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT1G79410 64 / 2e-10 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT2G35740 59 / 4e-09 ATINT3 nositol transporter 3 (.1) AT2G43330 56 / 4e-08 ATINT1 inositol transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G000800 [exp] 795 / 0 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003000 [exp] 666 / 0 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G150700 [exp] 493 / 4e-171 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 313 / 1e-98 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.011G130533 [exp] 91 / 3e-19 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.004G152300 [exp] 84 / 5e-17 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 82 / 2e-16 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 73 / 2e-13 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.015G029400 [exp] 70 / 1e-12 AT1G73220 519 / 1e-180 organic cation/carnitine transporter1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033337 [exp] 580 / 0 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10043061 [exp] 575 / 0 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 546 / 0 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027577 [exp] 479 / 3e-165 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 468 / 4e-161 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10018992 [exp] 451 / 2e-154 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10035704 [exp] 412 / 4e-140 AT3G13050 378 / 1e-127 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10037295 [exp] 405 / 2e-137 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027576 [exp] 276 / 1e-88 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10011995 [exp] 98 / 9e-23 ND 96 / 2e-22
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.007G003100.1 pacid=42766012 polypeptide=Potri.007G003100.1.p locus=Potri.007G003100 ID=Potri.007G003100.1.v4.1 annot-version=v4.1 ATGAGCAAACAGCCTCACAAGAACAAACTCCATTTAGAAGAACAAGAGGATAGGTCTGCATTTATCAAGATGACAGATGGAGGTCCAAGGTATACTGTTG ATGACGCTATTCTGGCCATGGGGTTCGGAAAATTTCAATACTTTGTGCTTCTCTATGCTGGCATGGGCTGGGTTTCAGAAGCCATGGAGATGATGATTCT GTCATTTATAGGGCCAGCAGTTAAGTCTGATTGGAATCTTACTTCTCAGCAAGAGAGTTTAATAACCAGCGTGGTTTTTGCTGGCATGCTGGTTGGAGCA TATTCATGGGGTGTAGTTTCAGACAGATATGGAAGAAGGAAAGGTTTCTTGGTTACAGCAATAATTACTTCTGGAGCTGGTTTTCTAAGTGCTTTTGCCC CAAATTATATTGCATTGCTTGTTTTTCGTTGCCTGGTTGGTCTTGGTCTCGGGGGTGGTCCTGTACTCTTTGCTTGGTTTTTAGAGTTTGTACCAGCACC AAACAGAGGAATGTGGATGGTGATTATCTCAGCATTCTGGACATTTGGAGCAATCTTTGAGGCTTCACTGGCCTGGATTATCATGCCTAGATTAAATTGG AGGTGGCTACTGGCGGTATCCGCTTTGCCTTCATTCTTTCTCCTTATATTTTATGTCATGACACCAGAATCACCTAGGTATTTCTGTTTGAAAGGCCAAA AAGGTGACGCCCTTAGAGTTTTGGAGAAAATAGCCAAACAAAATAGGAAAGAATTGCCTCTTGGTGCTCTTGCTACCGATAATGAGATTGAGCTACAGGG AAAGAATATTCCTATAGAAGGCATGGTTTCACTGCCAGCAAGTAGAGATGGAGATGTTGCTCCTCTTCATCCTCCTCCTAAGTGGAAGGATTCTGACATG GGGGTCCTAAAATCTCTGTTATTGCTTATTTCACCTAAATTAGCTAGGTCAACCGTGCTTTTATGGGTGGTATTCTTTGGGAATGCATTTTCATACTATG GCCTTGTGTTGCTGACAACTGAGTTGAACAATAGGAACAACACGTGCAATCACACTAAAGCGCAGTCAGATAAGTCTTCTGCTGTTGATTACAAAGAAGT CTTCATCACTAGTTTTGCAGAGTTTCCGGGGCTCATTGTGTCAGCTCTCATAGTTGATAGGATTGGTCGTAAACTTTCAATGGCGGCTTTGTTCTTTGTG GCCTGCATCTTCCTGCTACCACTGGTAGTCCATCAGTCACCAAGGATAACAACAATTCTTCTCTTCGGTGCTCGAATATGCATCACAGGAACCTTCACTA TTGTCTTCATATACGCTCCAGAGATTTACCCAACATCAGTGAGATCAACAGGTATGGGAGTTGCAAGCGCAATGGGAAGAATCGGGGGAATGATTTGCCC GCTTGTGGCAGTAAGTTTGGTGCAAGGATGCCATCAGACAGCAGCACTAGTTCTTTTTGTGTGCGTAATGTTCGTAGCAGGATGCTGTGTAATGCTGTTT CCACATGAAACCAAGGGTCTTGAATTGACCGAGAGTGTATCCAGTACAAAAAATGAAAAACCAAAGGCTGTGAAGCAACAAGAGCCTTGA
AA sequence Show only first row Show all	>Potri.007G003100.1 pacid=42766012 polypeptide=Potri.007G003100.1.p locus=Potri.007G003100 ID=Potri.007G003100.1.v4.1 annot-version=v4.1 MSKQPHKNKLHLEEQEDRSAFIKMTDGGPRYTVDDAILAMGFGKFQYFVLLYAGMGWVSEAMEMMILSFIGPAVKSDWNLTSQQESLITSVVFAGMLVGA YSWGVVSDRYGRRKGFLVTAIITSGAGFLSAFAPNYIALLVFRCLVGLGLGGGPVLFAWFLEFVPAPNRGMWMVIISAFWTFGAIFEASLAWIIMPRLNW RWLLAVSALPSFFLLIFYVMTPESPRYFCLKGQKGDALRVLEKIAKQNRKELPLGALATDNEIELQGKNIPIEGMVSLPASRDGDVAPLHPPPKWKDSDM GVLKSLLLLISPKLARSTVLLWVVFFGNAFSYYGLVLLTTELNNRNNTCNHTKAQSDKSSAVDYKEVFITSFAEFPGLIVSALIVDRIGRKLSMAALFFV ACIFLLPLVVHQSPRITTILLFGARICITGTFTIVFIYAPEIYPTSVRSTGMGVASAMGRIGGMICPLVAVSLVQGCHQTAALVLFVCVMFVAGCCVMLF PHETKGLELTESVSSTKNEKPKAVKQQEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003100 [exp]	0	1
AT3G05970		LACS6, ATLACS6	long-chain acyl-CoA synthetase...		Potri.010G090200 [exp]	3.46	0.9209	Pt-LACS6.1
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.008G182000 [exp]	3.46	0.9276
AT5G62680			Major facilitator superfamily ...		Potri.012G071400 [exp]	5.29	0.8904
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G057901 [exp]	6.63	0.9276
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.013G148400 [exp]	8.83	0.9162
AT3G07700			Protein kinase superfamily pro...		Potri.014G168600 [exp]	8.94	0.9105
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	12.24	0.9093
AT3G60780			Protein of unknown function (D...		Potri.002G147100 [exp]	15.16	0.8954
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.007G026500 [exp]	16.34	0.8621
AT1G21000			PLATZ transcription factor fam...		Potri.005G259000 [exp]	18.38	0.9049

Compare expression of checked genes

Potri.007G003100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.