Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HAC901,Pt-HAC1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79000 1844 / 0 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) AT1G16710 1738 / 0 HAC12 histone acetyltransferase of the CBP family 12 (.1.2) AT3G12980 1485 / 0 HAC5 ,ATHPCAT4 histone acetyltransferase of the CBP family 5 (.1) AT1G55970 1193 / 0 HAG4, HAG04, HAC6, HAC04, HAC4 ,ATHPCAT2 HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 4, HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 04, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 6, histone acetyltransferase of the CBP family 4 (.1) AT1G67220 642 / 0 HAC02, HAC2 ,ATHPCAT1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 1, histone acetyltransferase of the CBP family 2 (.1) AT5G67480 74 / 2e-13 ATBT4, BT4 BTB and TAZ domain protein 4 (.1.2) AT4G37610 64 / 2e-10 BT5 BTB and TAZ domain protein 5 (.1) AT1G05690 54 / 4e-07 BT3 BTB and TAZ domain protein 3 (.1) AT5G63160 53 / 1e-06 BT1 BTB and TAZ domain protein 1 (.1) AT3G02260 47 / 0.0001 CRM1, TIR3, LPR1, DOC1, ASA1, UMB1, BIG UMBRELLA 1, TRANSPORT INHIBITOR RESPONSE 3, LOW PHOSPHATE-RESISTANT ROOT 1, DARK OVER-EXPRESSION OF CAB 1, CORYMBOSA1, ATTENUATED SHADE AVOIDANCE 1, auxin transport protein (BIG) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G000500 [exp] 2442 / 0 AT1G79000 1829 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.004G104201 [exp] 883 / 0 AT1G79000 860 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.019G036800 [exp] 155 / 1e-41 AT1G79000 107 / 1e-25 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.007G055100 [exp] 74 / 4e-13 AT5G67480 438 / 2e-153 BTB and TAZ domain protein 4 (.1.2) Potri.007G140400 [exp] 73 / 4e-13 AT1G05690 407 / 3e-141 BTB and TAZ domain protein 3 (.1) Potri.017G009700 [exp] 70 / 6e-12 AT1G05690 451 / 9e-159 BTB and TAZ domain protein 3 (.1) Potri.015G087700 [exp] 54 / 4e-07 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.012G091400 [exp] 51 / 3e-06 AT5G63160 404 / 7e-141 BTB and TAZ domain protein 1 (.1) Potri.014G166300 [exp] 45 / 0.0003 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033319 [exp] 1998 / 0 AT1G79000 1952 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033321 [exp] 1953 / 0 AT1G79000 1965 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10034780 [exp] 1839 / 0 AT1G79000 1715 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10011523 [exp] 74 / 4e-13 AT5G67480 482 / 6e-171 BTB and TAZ domain protein 4 (.1.2) Lus10019299 [exp] 73 / 5e-13 AT5G67480 487 / 7e-173 BTB and TAZ domain protein 4 (.1.2) Lus10042082 [exp] 61 / 3e-09 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10018087 [exp] 60 / 7e-09 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10025196 [exp] 56 / 1e-07 AT5G67480 425 / 9e-149 BTB and TAZ domain protein 4 (.1.2) Lus10013670 [exp] 53 / 9e-07 AT3G48360 371 / 6e-128 BTB and TAZ domain protein 2 (.1) Lus10033038 [exp] 52 / 9e-07 AT5G63160 184 / 5e-57 BTB and TAZ domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [poplar] [flax] C1 PF00569 [poplar] [flax] ZZ Zinc finger, ZZ type CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF02135 [poplar] [flax] zf-TAZ TAZ zinc finger CL0257 [poplar] [flax] Acetyltrans PF08214 [poplar] [flax] HAT_KAT11 Histone acetylation protein
Representative CDS sequence Show only first row Show all	>Potri.007G003400.2 pacid=42765714 polypeptide=Potri.007G003400.2.p locus=Potri.007G003400 ID=Potri.007G003400.2.v4.1 annot-version=v4.1 ATGGGGATGATGGGGAATAATATACCGCTTGCTAATGAGCCTGGTACCTCTGAGGGCTATATGACTTCCACACATTATGTGAATTCGCCTAAACCATTGC CACAGCAGTTTGATCAACATCAGCGACAACTAATGCAAGGTGATGGATATGGGATGAGTAATGCTGATTCTCTTGGATCTGGAAACATATATGGTGCTGT AACATCTGTTGGATCAATGATGAATGCCCAGTCTATGTCCAAAACTAACTCTTCTCTTGTAAATAATCAGTCTAATTTGCATGCCCTGCATCAAGCTGGA CATATAAAGCTTCAATCACTTGATCAGTCTGAAAAGATGAATTTCCAGTCTTCACTTCAACAGCAGCAACTTCAACAACATCCTCACCAACAGCAACAAC TTCAGCAGCATCCTCATCAATTTCAACAGCAGCAACTTGTTCAACAGCAACGTTTACAGAAGCAGCAAAGTCAGCAGCATCAGCATCTGCTGAACAATGA TGCTTTTGGTCAGTCTCTGCTCATATCTGATCCTAGCAGTCAAGTAAAGCGTGAGCCTGGAATGGAGCACCATAATGATGTTTTGCACTCACAAACCTCA GACCACTTCCAAATATCTGAATTGCAAAACCAATTCCAGCAAAATGTGCTTGGAGACCATTCTAGGAATGCGCAGAATCCCCCTCATCCAGACCGACAGC ATGACATGAGCTCATCATTGACACAAAATTCACAGCAAATGCAACAGATGTTGCATCCACATCAGTTGGTTTCAGAGTCTCAAAATAATTTTAATGGCCT TTCTGTTGGGACACAATCAGATTCAGCATTGCCAGGTCAATGGTATCCACAATCTCAGGACCGGACTCGCATGCCAGGGAGCAATTCACATGAGCAGCAT GTCCAAGAGGATTTCCTCCAGAGAATATCCGGGCAAGGTGAAGCTCAGTGTAATAATTTAGCTTCAGAAGGATCCATTGTCAGCCAAACAGTACCTCCTA GAAGCACATCAGAGCCCCAAAATTCAAATGGTGTCACCTATAGATCTGGAAACGCTAACCGTGACCGGCAATTTAGAAATCAACAGAAGTGGCTTTTGTT CTTGCGGCATGCCCGGCGATGTCCTGCCCCAGAAGGTCAATGTCCTGACCCCAACTGCACTACTGTCCAAAAGCTGTTGAGGCACATGGACAGATGCAAC TCCACTCCATGCTCATATCCCCGATGCCAGCATACCAGGATATTGATTCATCACTTTAAGCACTGCAGAGATTCAGGTTGCCCTGTTTGTATTCCTGTTA GAAATTATCTAGAGGCACAAATAAAGATACAAATGAAGGCCCGCACTCTTCCAGCCTTAGATTCTGGTTTGCCAAGCAAAGGCAGTGATACTGGAGACAA TGCAGCCCGATTGATTTCAAGAACTCCATCAATTGTTGAAAGCTCTGAAAATCTACAACCTTCTCTAAAACGCATGAAGATTGAGCAATCTTCCCAAACT CTTAAACCTGAGATTGAAGTTTCTGTCATATCAGCATCTGCAGTCAGTGATGCTCATATAACCCTGGATGTCCAGCACCAAGATCACAAGCATGGTGATA ATTGTCCGCTGGTTAAGTCTGAGTACATGGAAGTGAAGTTGGAAGTACCTGCAATTTCTAGACAAGGAAGTCCTAGTAATAGTGAGATGAAAAAGGATAA CGTGGATGATGTCAGCAGCCAAATGCCTGCAGATGAATCCATGGTACATGATGAGCCTGCCAGTTTAGCTAAGCAGGACAACGTTAAAGTTGAGAAAGAA GCTCATCTACTTAAGCAAGAAAATGCTACGCACCCTGCTGAAAATGCAGCTGGAACCAAGTCTGGGAAGCCAAAAATAAAGGGGGTATCATTGACTGAAC TGTTCACGCCTGAACAAGTGAGGGAGCATATTATAGGCCTCAGGCAGTGGGTTGGCCAGAGTAAGTCAAAGGCAGAAAAGAATCAAGCAATGGAGCATTC AATGAGTGAGAACTCTTGTCAATTGTGTGCAGTTGAAAAGCTTACTTTTGAACCACCACCAATATACTGTACACCCTGTGGTGCTCGCATTAAGCGGAAT GCAATGTTTTATACTATGGGAGCTGGTGATACACGACACTATTTCTGTATTCCATGCTATAATGAGGCTCGTGGGGACACTATTGTTGCTGATGGGAATG CTATTCCAAAGGCAAGACTCGAGAAGAAGAAAAATGATGAGGAGACTGAAGAATGGTGGGTTCAATGTGACAAATGTGAAGCTTGGCAACACCAAATTTG TGCTTTATTTAATGGTAGAAGGAATGATGGTGGGCAAGCTGAATATACTTGCCCTAATTGCTACATAACAGAGGTTGAAAGAGGAGAGCGCAAGCCTTTA CCACAAAGTGCAGTTCTGGGGGCTAAAGATCTACCTAGAACAATACTCAGTGATCATATAGAGCAGAGGTTATTTAGGACACTGAAGCAGGAAAGACAGG ATAGGGCCAGGGCACAGGGGAAAAGTTTTGATGATGTTCCTGGAGCAGAATCACTTGTAGTCCGAGTTGTTTCATCAGTTGACAAAAAGTTGGAAGTGAA GCAGCGATTTCTTGAGATATTTCGGGAGGAGAATTATCCAACTGAATTCCCGTATAAGTCTAAGGTAGTTTTGCTGTTTCAGAAGATTGAAGGTGTTGAG GTATGCCTATTTGGCATGTATGTTCAAGAATTCGGATCAGAAGCTCACTTTCCAAATCAGCGTCGTGTCTATCTTTCATATCTGGATTCTGTGAAGTACT TCAGACCTGAGATTAAAGCAGTGACTGGAGAGGCTCTCCGTACATTTGTTTACCATGAAATTTTGATTGGATACCTTGAATACTGCAAGAAAAGGGGTTT TACAAGCTGCTACATATGGGCTTGCCCTCCGTTAAAGGGTGAGGATTATATATTGTATTGCCATCCAGAAATCCAGAAAACACCAAAATCTGACAAGCTC CGGGAATGGTATTTAGTGATGTTACGAAAAGCAGCCAAGGAAAATGTTGTTGTTGACCTCACTAATTTGTATGACCATTTCTTCATATCTACTGGTGAAT GTAAGGCAAAGGTCACAGCAGCTAGGCTACCCTACTTTGATGGGGATTATTGGCCTGGTGCTGCAGAGGATTTAATCTATCAGCTTAATCAAGATGAAGA TGGGAGAAAACAAAATAAGAAGGGAAGTACCAAAAAGACCATTACAAAAAGGGCTCTAAAAGCATCTGGCCAGGCAGATCTTTCTGGTAATGCATCGAAG GATCTGCTACTGATGCATAAACTTGGTGAGACAATTTGCCCTATGAAGGAAGACTTTATCATGGTTCACTTGCAGCCTTGCTGTTCTCATTGTTGTATTC TTATGGTATTGGGCACCCATTGGGTTTGCAACCAGTGCAAAAACTTTCAGATTTGTGACAAGTGTTATGAAGTAGAACAGAAACGTGAAGAAAGAGAGCG ACATCCCATCAACCAAAGGGAAAAACATGCATTCTATCATGTTGAAATCACTGATGTACCTGCTGACACAAAGGATAAAGATGAAATTCTCGAGAGTGAA TTTTTTGACACGAGACAGGCATTTTTGAGTCTTTGTCAAGGAAACCATTATCAATATGACACTTTACGCCGGGCTAAACATTCCTCAATGATGGTCCTTT ACCATCTCCATAATCCAACTGCTCCTGCATTTGTGACAACATGCAATATATGTCATCTTGACATCGAAACGGGTCAAGGTTGGCGTTGTGAGGTTTGCCC TGATTATGATGTATGCAATTCTTGTTATCAGAAGGATGGGGGTATGGATCATCCTCATAAGTTGACGAATCATCCATCCCTGGCAGAGCGCGATGCACAG AACAAGGAAGCTAGGCAACAGAGGGTTCTGCAGCTAAGGAAAATGCTTGATCTTCTGGTACATGCATCACAATGCCGTTCTCCACATTGCCAATATCCTA ATTGTCGCAAGGTGAAAGGTCTTTTCCGGCATGGGATACAGTGCAAAACTCGTGCATCTGGAGGCTGTGTCCTGTGTAAAAAGATGTGGTATCTCCTTCA ACTTCATGCTCGGGCATGCAAAGAATCAGAATGCCATGTTCCACGCTGCAGGGACTTGAAAGAACATTTGAGGAGACTTCAGCAGCAGTCTGATTCACGA CGAAGGGCTGCTGTGATGGAGATGATGAGGCAGAGAGCTGCTGAGGTTGCTGGCAATACTGGGTAA
AA sequence Show only first row Show all	>Potri.007G003400.2 pacid=42765714 polypeptide=Potri.007G003400.2.p locus=Potri.007G003400 ID=Potri.007G003400.2.v4.1 annot-version=v4.1 MGMMGNNIPLANEPGTSEGYMTSTHYVNSPKPLPQQFDQHQRQLMQGDGYGMSNADSLGSGNIYGAVTSVGSMMNAQSMSKTNSSLVNNQSNLHALHQAG HIKLQSLDQSEKMNFQSSLQQQQLQQHPHQQQQLQQHPHQFQQQQLVQQQRLQKQQSQQHQHLLNNDAFGQSLLISDPSSQVKREPGMEHHNDVLHSQTS DHFQISELQNQFQQNVLGDHSRNAQNPPHPDRQHDMSSSLTQNSQQMQQMLHPHQLVSESQNNFNGLSVGTQSDSALPGQWYPQSQDRTRMPGSNSHEQH VQEDFLQRISGQGEAQCNNLASEGSIVSQTVPPRSTSEPQNSNGVTYRSGNANRDRQFRNQQKWLLFLRHARRCPAPEGQCPDPNCTTVQKLLRHMDRCN STPCSYPRCQHTRILIHHFKHCRDSGCPVCIPVRNYLEAQIKIQMKARTLPALDSGLPSKGSDTGDNAARLISRTPSIVESSENLQPSLKRMKIEQSSQT LKPEIEVSVISASAVSDAHITLDVQHQDHKHGDNCPLVKSEYMEVKLEVPAISRQGSPSNSEMKKDNVDDVSSQMPADESMVHDEPASLAKQDNVKVEKE AHLLKQENATHPAENAAGTKSGKPKIKGVSLTELFTPEQVREHIIGLRQWVGQSKSKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTPCGARIKRN AMFYTMGAGDTRHYFCIPCYNEARGDTIVADGNAIPKARLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYITEVERGERKPL PQSAVLGAKDLPRTILSDHIEQRLFRTLKQERQDRARAQGKSFDDVPGAESLVVRVVSSVDKKLEVKQRFLEIFREENYPTEFPYKSKVVLLFQKIEGVE VCLFGMYVQEFGSEAHFPNQRRVYLSYLDSVKYFRPEIKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKL REWYLVMLRKAAKENVVVDLTNLYDHFFISTGECKAKVTAARLPYFDGDYWPGAAEDLIYQLNQDEDGRKQNKKGSTKKTITKRALKASGQADLSGNASK DLLLMHKLGETICPMKEDFIMVHLQPCCSHCCILMVLGTHWVCNQCKNFQICDKCYEVEQKREERERHPINQREKHAFYHVEITDVPADTKDKDEILESE FFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICHLDIETGQGWRCEVCPDYDVCNSCYQKDGGMDHPHKLTNHPSLAERDAQ NKEARQQRVLQLRKMLDLLVHASQCRSPHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSR RRAAVMEMMRQRAAEVAGNTG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	0	1	HAC901,Pt-HAC1.4
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	1.41	0.9271
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.012G144400 [exp]	1.41	0.9316
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	2.00	0.9191
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.006G047100 [exp]	3.74	0.9174
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.014G132800 [exp]	4.24	0.9191	Pt-LD.2
AT1G15780			unknown protein		Potri.001G204900 [exp]	4.24	0.9183
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.006G120200 [exp]	4.47	0.9046
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	5.00	0.9187	CPC902,TTN8.3
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Potri.010G068400 [exp]	5.09	0.8835
AT5G52530			dentin sialophosphoprotein-rel...		Potri.017G142600 [exp]	5.29	0.8963

Compare expression of checked genes

Potri.007G003400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.