Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32910 533 / 0 HXXXD-type acyl-transferase family protein (.1) AT1G78990 527 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G16410 449 / 6e-155 HXXXD-type acyl-transferase family protein (.1) AT1G31490 254 / 2e-79 HXXXD-type acyl-transferase family protein (.1) AT5G48930 125 / 2e-31 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G41040 121 / 6e-30 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 111 / 2e-26 HXXXD-type acyl-transferase family protein (.1) AT3G48720 111 / 2e-26 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT2G19070 108 / 3e-25 SHT spermidine hydroxycinnamoyl transferase (.1) AT3G03480 104 / 5e-24 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128100 [exp] 258 / 6e-81 AT1G31490 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G166600 [exp] 132 / 1e-33 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.006G165200 [exp] 127 / 8e-32 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 120 / 2e-29 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 120 / 2e-29 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 118 / 1e-28 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.017G068500 [exp] 116 / 3e-28 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G042900 [exp] 115 / 6e-28 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.015G100800 [exp] 115 / 8e-28 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033327 [exp] 492 / 6e-172 AT1G32910 485 / 8e-170 HXXXD-type acyl-transferase family protein (.1) Lus10006333 [exp] 416 / 9e-143 AT1G32910 428 / 5e-148 HXXXD-type acyl-transferase family protein (.1) Lus10034786 [exp] 325 / 1e-107 AT1G32910 334 / 7e-112 HXXXD-type acyl-transferase family protein (.1) Lus10023806 [exp] 238 / 4e-73 AT1G31490 511 / 3e-180 HXXXD-type acyl-transferase family protein (.1) Lus10012552 [exp] 139 / 4e-36 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10010786 [exp] 132 / 2e-33 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 129 / 1e-32 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10035190 [exp] 129 / 2e-32 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 127 / 6e-32 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10026123 [exp] 119 / 6e-29 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.007G003800.1 pacid=42766809 polypeptide=Potri.007G003800.1.p locus=Potri.007G003800 ID=Potri.007G003800.1.v4.1 annot-version=v4.1 ATGGGTGCTACTGGAGGAGATGATCATCAGGCGGCCGGCATGTTCTCAGTGACCGTGACCGAGAAGGAGGTGGTGGCAGCAGTGCTACCACTGCACGAAC ATTGGCTGCCACTCTCCAACCTTGACTTGCTTCTTCCTCCACTTGATGTGGGTGTTTTCTTTTGTTACAAGAGACCAACGTCGTCGACCTTGACGATCAG CTCATCCTCACCAGCTACTAATTCTTACAATTTTCGGTCCATGGTTGGTGTTCTGAAAAAGGCCATGGCCCAAGTTCTGGTGTCTTACTACGCCTTTGCC GGAGAGGTTGTGGCTAACTCTGTGGGTGAGCCTGAGCTGCTGTGCAACAACCGAGGCGTGGACTTTTTTGAAGCAGTTGCAGATATTGAGCTTATGGACC TCAATTTGTATAACCCTGATGATAGCATTGAGGGGAAGCTCGTGCCCAGAAAGAAGAATGGGGTCCTTGCTGTCCAGGCAACACAACTGAAATGTGGCGG TTTAGTGGTGGCGTGCACGTTTGATCATCGCATTGCAGATGCCTACTCGGCCAACATGTTTTTGGTGTCATGGGCAGAGACAGCTCAATCTAAACCAATA TCACTGCTTCCATCGTTCAGAAGATCCTTGCTAAACCCAAGACGACCTAGTTGCGTGGACGCTTCTTTGGACAACATGTACGTGCCCGTCTCCACACTGT CACCTCCCAAAGAGCCTGCACCTGATGCTGATCAACTCGTAAGTCGCATATACTATGTGAAAGCAGATGACCTAAATCAACTACAATCCCTTGCTAGCTC CAAAGGGAACAAGAGGACAAAAATGGAATCATTTAGTGGATTCTTGTGGCAATTGGTTGCCAAGTATTGTGCTATAAAAGATGATGATGATGATGATGAT AACATTAACAATGCCTGCAAGAAGATATCAAAAATGGGCATCGTTGTGGATGGAAGGACTAGGTTAAGTAGTGATCTTGAAAGAGGGGATGTAATGGAAG CATACTTTGGAAATGTGCTATCCATCCCCTATGGTGGCAAGACAGTCCGTGAACTAATTGAAAATCCATTGAGTTGGGTTGCAAATGAGGTCCATGATTT CTTGGAAAATGCAGTGACCAAGGAGCATTTCTTAGGGCTGATTGATTGGGTGGAGGCTCGGAGGCCAGAGCCAGCTGTGGCCAAGATATATTGTGGTGGT GGTGATAGCGACGGGCCGGCTTTCGTCGTCTCCTCCGGGCAAAGATTCCCGGTCTCGAAGGTGGATTTCGGCTGGGGTGTGCCTCTTTTCGGGTCGTATC ATTTTCCGTGGGGTGGAACTGCTGGGTACGTGATGCCCATGCCAAATCCAGCAGGTAATGGTGATTGGATGGTGTACATGCACCTGTTCAGAGGGCAGCT GGAGTTCATCGAGACAGAAGCTTCCAATTTCCTTAGGCCCTTGACTTGCAATTATCTACGTTGCCTATCTGCATCATCAAACTAG
AA sequence Show only first row Show all	>Potri.007G003800.1 pacid=42766809 polypeptide=Potri.007G003800.1.p locus=Potri.007G003800 ID=Potri.007G003800.1.v4.1 annot-version=v4.1 MGATGGDDHQAAGMFSVTVTEKEVVAAVLPLHEHWLPLSNLDLLLPPLDVGVFFCYKRPTSSTLTISSSSPATNSYNFRSMVGVLKKAMAQVLVSYYAFA GEVVANSVGEPELLCNNRGVDFFEAVADIELMDLNLYNPDDSIEGKLVPRKKNGVLAVQATQLKCGGLVVACTFDHRIADAYSANMFLVSWAETAQSKPI SLLPSFRRSLLNPRRPSCVDASLDNMYVPVSTLSPPKEPAPDADQLVSRIYYVKADDLNQLQSLASSKGNKRTKMESFSGFLWQLVAKYCAIKDDDDDDD NINNACKKISKMGIVVDGRTRLSSDLERGDVMEAYFGNVLSIPYGGKTVRELIENPLSWVANEVHDFLENAVTKEHFLGLIDWVEARRPEPAVAKIYCGG GDSDGPAFVVSSGQRFPVSKVDFGWGVPLFGSYHFPWGGTAGYVMPMPNPAGNGDWMVYMHLFRGQLEFIETEASNFLRPLTCNYLRCLSASSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32910			HXXXD-type acyl-transferase fa...		Potri.007G003800 [exp]	0	1
AT1G14600	GARP		Homeodomain-like superfamily p...		Potri.010G099600 [exp]	1.00	0.8996
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Potri.010G184200 [exp]	3.00	0.8885
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.007G140300 [exp]	6.32	0.8775	ZOG1.10
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016700 [exp]	11.22	0.8760
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004500 [exp]	11.57	0.8894
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121000 [exp]	12.40	0.8451
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G016715 [exp]	12.96	0.8528
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025800 [exp]	13.26	0.8502
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013100 [exp]	23.87	0.8646
AT2G16750			Protein kinase protein with ad...		Potri.009G134700 [exp]	29.39	0.8305

Compare expression of checked genes

Potri.007G003800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.