Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13000 655 / 0 Protein of unknown function, DUF547 (.1.2) AT1G16750 431 / 1e-144 Protein of unknown function, DUF547 (.1) AT5G47380 177 / 1e-47 Protein of unknown function, DUF547 (.1) AT5G42690 172 / 1e-46 Protein of unknown function, DUF547 (.1.2.3) AT4G37080 161 / 3e-42 Protein of unknown function, DUF547 (.1.2.3) AT5G66600 158 / 5e-41 Protein of unknown function, DUF547 (.1.2.3.4) AT2G39690 152 / 2e-39 Protein of unknown function, DUF547 (.1.2) AT2G23700 152 / 1e-38 Protein of unknown function, DUF547 (.1) AT3G12540 145 / 3e-37 Protein of unknown function, DUF547 (.1) AT1G76620 139 / 7e-35 Protein of unknown function, DUF547 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216800 [exp] 453 / 1e-152 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.001G157200 [exp] 176 / 2e-47 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.007G033100 [exp] 167 / 3e-44 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G041100 [exp] 166 / 1e-43 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3) Potri.005G130000 [exp] 165 / 2e-43 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.009G111100 [exp] 161 / 4e-42 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 159 / 4e-41 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.014G034800 [exp] 151 / 7e-39 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3) Potri.010G202900 [exp] 147 / 1e-37 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033328 [exp] 748 / 0 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 737 / 0 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10037293 [exp] 660 / 0 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10035703 [exp] 578 / 0 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10027653 [exp] 395 / 5e-130 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 389 / 1e-127 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10016786 [exp] 173 / 6e-46 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 172 / 8e-46 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10007795 [exp] 167 / 2e-43 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10032768 [exp] 141 / 2e-35 AT4G37080 495 / 3e-171 Protein of unknown function, DUF547 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [poplar] [flax] DUF547 Protein of unknown function, DUF547 PF14389 [poplar] [flax] Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1
Representative CDS sequence Show only first row Show all	>Potri.007G003900.3 pacid=42765739 polypeptide=Potri.007G003900.3.p locus=Potri.007G003900 ID=Potri.007G003900.3.v4.1 annot-version=v4.1 ATGTTCCTTCCTTCAAGAAGCCAAGATGCTTGGGGGATTTTAGAACGTGCCAAGCCCTGTGATCGCAGGATGTGTGACTCTCCAGTTATGCTCAGCCAAA GTGATTCTACCTCTAAAATTCTGTATTCTGAGGTGACCTATGACAATTCAAAAACTCAGGAAGATCTTGCAGATGAAGTCTGGAGCACCAGCTCTTCATT GGAGGCAAACAATGTGAATGAAGAGGCTGGAAGTTTTGCATCGTGCATTAGAAGCAGCAATCCTTATCCTTATAGAATCCAACTTGAACGGGATGTACGG AGATTACAACAGCAGTTGCAAGATGAGATGGAAATGCATGCTATTCTGGAAAGTGCTATTGAGAAAAATACAGTAAAATTATTTAGTCCATCATGCCTCC CACACCATTTTGAACAGGCTCAGGAGCTTCTGTCCACTATTGCAGTACTGGAGGTCACAGTTACAAAGCTTGAACAAGAGATTGTTTCTTTGCATTTCCA ACTAAGTCAAGAGAGAAATGAGCGAAGGCTTGCTGAATATCGTTTGAGGCAGTCAGCTTCTCAATCATTATCTGCTTACTCCTTTGATAGCATGAAAGAA GAGATTTCTTCTTCTTCGAGGAGTCTGAAGCATTCAGATTATGAACTGCACCAATCAGAGAAGAATAACTCATGCAAACACCAAGCATCTGAATCTACTG GTGAAACATCTAGTGCTCAGTCTTTGACGGAGGATTCAATGAAGGCACCAGAGCTTTTCCATGAGAAGAAAGTATCCGTGCAGACAGATGCCAAACCCAC TCAACCCGCAGAGCTCATGAGGCTTCCAAAAGGAATGCCGCCTAAGGGCCTTTGGGACTACCCTAATCAACTTTCAGAGGAGATGGTAAGATGTATGAAA AATATTTTCCTGTCTCTGGCAGATTCTGCTGTGCCATCCATGTCCTCTGCTTTAGAGAGCCAATCCTCACCTGTGTCACCGAGAGGACATCTGTCCAGTT CATCATGGTGGTCTTCATCTGAGCGCTCAATGATTTCATCATGGGTGCAGAGCCCCCAGATTGACATACAAAGTAACTCTGAAGTGTTGGCATTGGGCAG TGTCTTTGATCCCTACAAAGTGCATGGCAAGTTGAGTTGGGCAGACATTGGAAACTATGGTTTAGCAACTGAAGTTTCTTGGATGTCAGTTGGAAAGAAG CAACTAGAATATGCATCGGGGGCATTAAGGAAATTCAGAACACTTGTTGAGCAACTCGCCAAGGTGAACCCTATCCATTTGAGCTCCAATGAGAAGCTTG CTTTCTGGATCAATCTGTACAATGCTTTGATTATGCATGCGTACTTGGCATATGGAGTCCCAAGGAGTGACTTGAAGCTCTTCTCGTTGATGCAAAAGGC CGCATACACTATTGGAGGACATTATTTTAGTGCAGCTGCCATTGAGTATGTGATTTTGAAGATGAAACCACCTCTCCACAGGCCACAAATTGCTTTACTT CTTGCACTTCACAAGTTGAGGCTATCAGAGGAACAGCAGAAGTCTGTGATTGATGCACATGAACCTCTTGTAGCATTTGCCCTAAGCTGTGGAATGTACT CGTCACCAGCAGTAAGGGTGTTCACTGCTAAGAATGTGAGAGAAGAACTTCAAGAAGCTCAACATGATTTCATTCGAGCTTCAGCTGGAGTTAGCAACAA AGGGAAGCTGTTGGTGCCGAAAATGCTCCATTGTTTTGCTAAAGGCTTTGTGGACGATACGAATTTGGCAGTATGGATATCACATTACCTTCCACCCAAT CAGGCTGCCTTTGTAGAGCAATGCATTTCACAAAGGCGACAAAGCCTTCTTGGCTCACGTAATTGTGGCATTCTTCCCTTCGATTCTCGTTTCCGTTACC TTTTCCTGCCCGACAAAACTTCACGTTGA
AA sequence Show only first row Show all	>Potri.007G003900.3 pacid=42765739 polypeptide=Potri.007G003900.3.p locus=Potri.007G003900 ID=Potri.007G003900.3.v4.1 annot-version=v4.1 MFLPSRSQDAWGILERAKPCDRRMCDSPVMLSQSDSTSKILYSEVTYDNSKTQEDLADEVWSTSSSLEANNVNEEAGSFASCIRSSNPYPYRIQLERDVR RLQQQLQDEMEMHAILESAIEKNTVKLFSPSCLPHHFEQAQELLSTIAVLEVTVTKLEQEIVSLHFQLSQERNERRLAEYRLRQSASQSLSAYSFDSMKE EISSSSRSLKHSDYELHQSEKNNSCKHQASESTGETSSAQSLTEDSMKAPELFHEKKVSVQTDAKPTQPAELMRLPKGMPPKGLWDYPNQLSEEMVRCMK NIFLSLADSAVPSMSSALESQSSPVSPRGHLSSSSWWSSSERSMISSWVQSPQIDIQSNSEVLALGSVFDPYKVHGKLSWADIGNYGLATEVSWMSVGKK QLEYASGALRKFRTLVEQLAKVNPIHLSSNEKLAFWINLYNALIMHAYLAYGVPRSDLKLFSLMQKAAYTIGGHYFSAAAIEYVILKMKPPLHRPQIALL LALHKLRLSEEQQKSVIDAHEPLVAFALSCGMYSSPAVRVFTAKNVREELQEAQHDFIRASAGVSNKGKLLVPKMLHCFAKGFVDDTNLAVWISHYLPPN QAAFVEQCISQRRQSLLGSRNCGILPFDSRFRYLFLPDKTSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13000			Protein of unknown function, D...		Potri.007G003900 [exp]	0	1
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.017G009900 [exp]	4.89	0.7955
AT5G38410			Ribulose bisphosphate carboxyl...		Potri.018G091401 [exp]	6.48	0.7558
AT1G09750			Eukaryotic aspartyl protease f...		Potri.002G104600 [exp]	6.63	0.8468
AT1G68400			leucine-rich repeat transmembr...		Potri.010G121700 [exp]	7.21	0.8499
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.004G189000 [exp]	7.34	0.8075	Pt-ATCSLA02.2
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.002G114800 [exp]	7.74	0.8443
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G037900 [exp]	8.24	0.8096
AT3G14240			Subtilase family protein (.1)		Potri.001G163600 [exp]	10.48	0.7750
AT1G15080		ATLPP2, LPP2, A...	PHOSPHATIDIC ACID PHOSPHATASE ...		Potri.010G119300 [exp]	12.04	0.7675	Pt-PAP2.2
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Potri.012G083500 [exp]	12.32	0.7596

Compare expression of checked genes

Potri.007G003900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.