Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 571 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 517 / 1e-175 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 408 / 2e-133 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 376 / 9e-121 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 367 / 8e-118 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 353 / 2e-112 RLK receptor lectin kinase (.1) AT4G02410 349 / 1e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 343 / 3e-108 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 335 / 1e-105 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 322 / 2e-100 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283400 [exp] 669 / 0 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 666 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 666 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 666 / 0 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 663 / 0 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G094700 [exp] 663 / 0 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 663 / 0 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 632 / 0 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 625 / 0 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004279 [exp] 766 / 0 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 587 / 0 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 580 / 0 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 569 / 0 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 568 / 0 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 566 / 0 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 563 / 0 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 538 / 0 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029554 [exp] 518 / 3e-176 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029553 [exp] 513 / 2e-174 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.007G004200.1 pacid=42765975 polypeptide=Potri.007G004200.1.p locus=Potri.007G004200 ID=Potri.007G004200.1.v4.1 annot-version=v4.1 ATGATGGCTCTTCCTAACTCAATTCCATGCCTTGTTCAATCTCAGAAAATCCCTACTCTTGTGTTTGCAATCTCCACCTTGTTCCTATATGCAAACTCAC TTTCCTTCAACTTCACCAGTTTCAGTCCCAACATGGCCAACATATTCTTCCAAGGCGATGCGTTTTCATCCAGCGATGTTCTCCAACTCACAAAGAATGC TAAAGATATTAACCTCACTGGCAGTGCCGGGCGAGCTTCGTATTATAAGCCTGTCCGTCTCTGGGATGCCAAGACACGAAGGCTTACAGACTTCACCACC CATTTCACCTTCGTCATGAAAGCAGTAGACTCGGGAAGGTATGGCGATGGGATGTCTTTTTTCATTGCACCACTAGACTCTCCGATCCCGCAGGATTCAA GTGGTGGGCTCCTTGCATTATTTAGTCCTCATACTGCTTTAAGTGCCTCCAAAGAAAATCAAATTGTTGCTGTTGAGTTTGATAGCAAAAAAGATATTGA ATGGGATCCTAGTGATAATCATGTAGGCATTGATGTGAACTCCATTGTGTCCGTGGCTAGTGTCGATTGGAAAAGCAGCATTAAAACTGGATCAAAGGCA AATGCATGGGTAAGTTACAACTCCACTACCAAAAACTTGAGCGTCTTTCTAACTTATGCTGAAAACCCTGAGTTCGGTGGGAACTCTACCCTTCATTATA TTATTGATCTTAGGGAGTTTTTGCCTGAATGGGTCAGGATAGGTTTCTCTGCTTCCACAGGTGATTGGGTTGAAATACATAACATTTTATCTTGGACGTT TGAATCAAGCTTGGAAGTTAGTGATAAGAAGAAAACAGGATTAGTTGTTGGTTTAGCTGTGGGTATTGGAGTTCTGACTACTTTTGGGATAGGTGTGTTA TGTTTTGTTCTCTGCTGGAGAAAAAATAGGACACGCTGTGAAAAGGACAATGAGGCCATCGATGTCTCCATGGACGATGAGTTTGAGAAGGGGACTGGGC CTAAGAGGTTCACTTACCGTGAACTAATTCGGGCAACCAACAACTTTGCGGAGGGGGGAAAGCTCGGAGAAGGAGGATTTGGAGGTGTTTACAAGGGATT GTTGAACGAAGGTACCAACACAGAAGTTGCAGTTAAGAGGGTGTCAAGAGGATCGAAGCAAGGTAAAAAGGAGTACGTGTCAGAAGTAAAGATCATCAGT CGTTTGAGGCACAGAAATTTGGTTCAACTCATTGGTTGGTGCCATGAAAGGGGTGAGCTTCTTCTAGTCTACGAGTTCATGCTCAATGGAAGCCTTGATT CGCATCTCTTTGGAGGACAAGTCATGTTAGTCTGGAACCTAAGGTACAAAATAGCCCTTGGCTTAGCTTCTGCCCTATTGTACCTTCACGAAGAATGGGA ACAATGTGTAGTGCATAGAGATATCAAGTCTAGCAACGTTATGTTAGATTCGAATTTCAATGCCAAACTTGGTGATTTTGGTCTGGCAAGGCTTGTAGAC CATGAATTGGGATCACAAACAACTGTTTTGGCCGGCACCATGGGCTATTTAGCTCCCGAATGTGTAACGACAGGCAAGGCTAGCAAAGAATCAGATGTCT ATAGCTTTGGTGTTGTCGCCCTTGAAATCACATGTGGAAGAAGGCCAGTAGAAACCAGGCAAGAACCAAGTAAAGTAAGGCTCGTGGAGTGGGTATGGAA CCTCTACGGCGAAGGGCAACTTCTTGATGCTGTTGACAAGATGTTGTGTACAGATTTCGATGAGCGGCAGATGGAGTGTTTGATGATTGTGGGATTATGG TGCTGCCATCCAGATTACACCCTTCGTCCATCTATAAGGCAAGTGATAAATGTTCTTAATTTTGAAGCTCCATTGCCTACGCTTCCTTCAAAATTGCCTG TTCCAATGTACTATGCTCCTCCCATGAGTATGTGCAAGTTCTCCTACACATCATCTGGCATCACAGCTGACTCCGAGAGATATCAAACTCAGTGTTCATG CAGCAGCTGCTCTACGAACTCTTCAATGTTGTCTGCAGGGCCTACAAAAGCTCTCTTGAATACACGGAAATCTGATATCTAG
AA sequence Show only first row Show all	>Potri.007G004200.1 pacid=42765975 polypeptide=Potri.007G004200.1.p locus=Potri.007G004200 ID=Potri.007G004200.1.v4.1 annot-version=v4.1 MMALPNSIPCLVQSQKIPTLVFAISTLFLYANSLSFNFTSFSPNMANIFFQGDAFSSSDVLQLTKNAKDINLTGSAGRASYYKPVRLWDAKTRRLTDFTT HFTFVMKAVDSGRYGDGMSFFIAPLDSPIPQDSSGGLLALFSPHTALSASKENQIVAVEFDSKKDIEWDPSDNHVGIDVNSIVSVASVDWKSSIKTGSKA NAWVSYNSTTKNLSVFLTYAENPEFGGNSTLHYIIDLREFLPEWVRIGFSASTGDWVEIHNILSWTFESSLEVSDKKKTGLVVGLAVGIGVLTTFGIGVL CFVLCWRKNRTRCEKDNEAIDVSMDDEFEKGTGPKRFTYRELIRATNNFAEGGKLGEGGFGGVYKGLLNEGTNTEVAVKRVSRGSKQGKKEYVSEVKIIS RLRHRNLVQLIGWCHERGELLLVYEFMLNGSLDSHLFGGQVMLVWNLRYKIALGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNAKLGDFGLARLVD HELGSQTTVLAGTMGYLAPECVTTGKASKESDVYSFGVVALEITCGRRPVETRQEPSKVRLVEWVWNLYGEGQLLDAVDKMLCTDFDERQMECLMIVGLW CCHPDYTLRPSIRQVINVLNFEAPLPTLPSKLPVPMYYAPPMSMCKFSYTSSGITADSERYQTQCSCSSCSTNSSMLSAGPTKALLNTRKSDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10530			Concanavalin A-like lectin pro...		Potri.007G004200 [exp]	0	1
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Potri.002G052100 [exp]	1.41	0.9786	CPS.1
					Potri.001G019985 [exp]	3.87	0.9762
AT2G33580			Protein kinase superfamily pro...		Potri.007G032300 [exp]	4.89	0.9764
					Potri.019G016100 [exp]	6.00	0.9741
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Potri.001G336700 [exp]	10.09	0.9625
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.006G248500 [exp]	12.84	0.9706
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039500 [exp]	12.96	0.9702
AT1G27040			Major facilitator superfamily ...		Potri.002G129500 [exp]	12.96	0.9698
AT1G03055			unknown protein		Potri.002G046500 [exp]	13.49	0.9641
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.002G209602 [exp]	15.49	0.9696

Compare expression of checked genes

Potri.007G004200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.