Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 738 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 633 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 362 / 5e-116 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 356 / 6e-114 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 347 / 1e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 345 / 7e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 343 / 5e-109 RLK receptor lectin kinase (.1) AT3G55550 343 / 9e-109 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 342 / 3e-108 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 340 / 9e-108 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004300 [exp] 1204 / 0 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 1160 / 0 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G094700 [exp] 843 / 0 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 613 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 565 / 0 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 561 / 0 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 554 / 0 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 553 / 0 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 551 / 0 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004277 [exp] 714 / 0 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 707 / 0 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029553 [exp] 613 / 0 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016836 [exp] 601 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10029554 [exp] 596 / 0 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 585 / 0 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 550 / 0 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 520 / 5e-177 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 514 / 1e-174 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 513 / 4e-172 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.007G004400.1 pacid=42765763 polypeptide=Potri.007G004400.1.p locus=Potri.007G004400 ID=Potri.007G004400.1.v4.1 annot-version=v4.1 ATGCCTCATCATTTCTACCTCTCCTTCCTTCTTCCGCTTCTCCTTCTTCCCTCTGCCAATTCAGTTTATTTTCAAATATCTCAGTTCAACGACACCAACA TGTATTATCAAGGCGATGCAGTGCCTTTTGGTGGACATATTGAATTCAACCTTGTTGATTATATAAATCGTGTTGGTTGGGCAACCTATCCTGAAAGGGT GCGGCTCTGGGACTCGAGTTCAGGGCAGCTTTCTGATTTCACATCTCATTTCTCCTTCACCATTAATACCCAAGGTGCAACCAATTATGGTCATGGAATT GCTTTCTTCCTTGCTCCTGTTGGTTTTCAAATCCCACCTAATTCTGCTGGTGGCTTCTTAGGCCTTTTCAACACTACAACCATGCAATCCCCTCAGAGTC AAATTGTTTCTGTGGAGTTTGATTCTTTTCCAAATTATGGATGGGATCCAAAAGTTGGGCATGTTGGGATCAACAACAACTCTATTAGCTCAGCTTTATA TACACCTTGGAATGCAAGCTTTCACAGTGGAGATACTGCTGAGGCATGGATTACCTATAATTCTACTGATCGAAATTTGAGTGTGTTTTGGGAGTACCAA ACAACCTCAGATCCTCGAGAGAATTCCAGTCTGTTTTACATAATCGATCTCAGTAAGTTTTTGCCTGAGTGGGTCACTGTTGGCTTCTCAGCGGCTACAG GCTCTAATGTAGAACAACAAAGACTTCTATCTTGGGAGTTTAATTCAAGTTTGAACGTTAAGGAGATGAAAGGTAATAAGAATTCAAAGAAGAGCAAGAT CAAAATTGATGTCATTGTTCCGGTACTTGTTCTGATAGCTGGGGCGACTACAGCACTTGTGATTTTGTGGAGGAGGAAACAAATGATGACAAGAAAAAGA GCAGCAGAGAAAATGAACGTGACGTCGATTAATGAAGACCTTGAAAGAGGAGCAGGGCCAAGAAGGTTCTCTTATGATGATCTAGTTTCAGCTACAAACA ACTTCTCAGACCAGAGGAAGCTAGGCGAAGGGGGGTTTGGTGCTGTTTATAGGGGATACTTAAATGATATGGACATGGAAATTGCAGTGAAGAAGATTTC AAGAAGTTCTAGACAAGGTAAAAAGGAGTACATCACCGAGGTGAAGACCATTAGCCAGTTGAGACACCGGAATCTGGTGCAACTCATAGGCTGGTGCCAT GATAAAGATGAGTTTATGGTGGTATATGAGTTCATGTCAAATGGCAGCCTCGATTCTCATCTCTTTGGCAAGAAGAAGGTGAATCCTCTAAGTTGGGTCG TGAGATACAAGATATCTCTTGGCCTGGCCTCGGCATTGCTTTATCTTCATGAAGAGTGGGAGCGGTGTGTTGTGCATCGAGATGTCAAATCAAGTAACAT AATGCTGGATTCTAGTTTTAATCTCAAGCTTGGTGACTTTGGGTTGGCTAGGCTGATGGACCATGATAAACCTGGTCCCACAACAACCGGGCTAGCAGGA ACTTTCGGTTACATGGCTCCAGAATACATAAGCACAAGAAGGGCTGGTAAAGAGTCTGATGTGTATAGCTTTGGAGTGGTGGCCTTAGAGATTGCTAGTG GAAGAAAGGCAAATGATCCCGTTGATCAAAATCCTGAAATGAGCTTGGTTGAGTGGATTTGGGATCTATATGGATGTGGACATCTTAGTTTGGCTGTTGA CAAGAGACTTGATATTAAGGATTTTGATGATGAGAAACAAGCAGAGCGTTTGATGATTGTTGGATTATGGTGTGCCCACCCCGACCGCAATTTGAGGCCA TCAATTCGACAGGCAATTCATGTTTTAAATCTCGAGGCTGCAATACCAGATCTGCCTCCAAAGATGCCTGTTCCTGTGTTTCATGTGCCTCTGCCACTAA TAACTTCTAGCCAGCCTTGTTCCATAACAAATACTAGCCTCGAAGCAGGAGGGCGTTGA
AA sequence Show only first row Show all	>Potri.007G004400.1 pacid=42765763 polypeptide=Potri.007G004400.1.p locus=Potri.007G004400 ID=Potri.007G004400.1.v4.1 annot-version=v4.1 MPHHFYLSFLLPLLLLPSANSVYFQISQFNDTNMYYQGDAVPFGGHIEFNLVDYINRVGWATYPERVRLWDSSSGQLSDFTSHFSFTINTQGATNYGHGI AFFLAPVGFQIPPNSAGGFLGLFNTTTMQSPQSQIVSVEFDSFPNYGWDPKVGHVGINNNSISSALYTPWNASFHSGDTAEAWITYNSTDRNLSVFWEYQ TTSDPRENSSLFYIIDLSKFLPEWVTVGFSAATGSNVEQQRLLSWEFNSSLNVKEMKGNKNSKKSKIKIDVIVPVLVLIAGATTALVILWRRKQMMTRKR AAEKMNVTSINEDLERGAGPRRFSYDDLVSATNNFSDQRKLGEGGFGAVYRGYLNDMDMEIAVKKISRSSRQGKKEYITEVKTISQLRHRNLVQLIGWCH DKDEFMVVYEFMSNGSLDSHLFGKKKVNPLSWVVRYKISLGLASALLYLHEEWERCVVHRDVKSSNIMLDSSFNLKLGDFGLARLMDHDKPGPTTTGLAG TFGYMAPEYISTRRAGKESDVYSFGVVALEIASGRKANDPVDQNPEMSLVEWIWDLYGCGHLSLAVDKRLDIKDFDDEKQAERLMIVGLWCAHPDRNLRP SIRQAIHVLNLEAAIPDLPPKMPVPVFHVPLPLITSSQPCSITNTSLEAGGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10530			Concanavalin A-like lectin pro...		Potri.007G004400 [exp]	0	1
AT3G44460	bZIP	DPBF2, ATBZIP67	basic leucine zipper transcrip...		Potri.009G164500 [exp]	4.58	0.8773	Pt-DPBF2.1
AT1G75640			Leucine-rich receptor-like pro...		Potri.005G235100 [exp]	9.21	0.8304
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022002 [exp]	9.89	0.8657
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Potri.002G005800 [exp]	13.30	0.8621
AT4G13540			unknown protein		Potri.008G174400 [exp]	14.83	0.8066
AT1G14760		KNATM	KNOX Arabidopsis thaliana mein...		Potri.012G043400 [exp]	16.79	0.8496
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	18.33	0.8568	Pt-ATML1.1
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.015G005900 [exp]	18.97	0.8549
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.015G039000 [exp]	19.62	0.8478
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.013G155500 [exp]	26.68	0.8448

Compare expression of checked genes

Potri.007G004400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.