Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65620 1196 / 0 Zincin-like metalloproteases family protein (.1) AT5G10540 1188 / 0 Zincin-like metalloproteases family protein (.1) AT5G51540 166 / 4e-43 Zincin-like metalloproteases family protein (.1) AT1G67690 164 / 1e-42 Zincin-like metalloproteases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G010100 [exp] 1335 / 0 AT5G65620 1199 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.009G151300 [exp] 180 / 5e-52 AT5G65620 187 / 1e-54 Zincin-like metalloproteases family protein (.1) Potri.010G054466 [exp] 171 / 6e-45 AT1G67690 850 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.015G129300 [exp] 149 / 3e-37 AT5G51540 1015 / 0.0 Zincin-like metalloproteases family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004276 [exp] 1159 / 0 AT5G10540 1183 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10019236 [exp] 1060 / 0 AT5G65620 1073 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10037058 [exp] 183 / 8e-49 AT1G67690 858 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10036925 [exp] 172 / 6e-45 AT1G67690 826 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031715 [exp] 167 / 2e-43 AT5G51540 1017 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031136 [exp] 110 / 7e-25 AT5G51540 917 / 0.0 Zincin-like metalloproteases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01432 [poplar] [flax] Peptidase_M3 Peptidase family M3
Representative CDS sequence Show only first row Show all	>Potri.007G004600.1 pacid=42765596 polypeptide=Potri.007G004600.1.p locus=Potri.007G004600 ID=Potri.007G004600.1.v4.1 annot-version=v4.1 ATGGCTACTGTCGTTGATGAATCCAATCCTTTATTGCAAGACTTTGAATTTCCTCCTTTTGATGTTGTTGAACATAAACATGTTCGACCTGGGATTCGTG CTCTCCTAAAGAACCTTGAGAGTGATTTGGAGGAATTGGAGAGAACAGTGGAGCCATCATGGCCAAAATTGGTGGAGCCATTGGAGAAGATAACAGATCA GTTGGCTATTGTTTGGGGTATGATCAATCATCTTAAGGCTGTTAAAGACTCACCTGAACTCCGTGCTGCAATTGAAGAAGTTCAGCCCGAAAAAGTTAAG TTTGAGCTTAGGTTGGGACAAAGTAAACCGATATATGATGCATTTAAGGCCATCCAAGAATCTCCTCAATGGACATCGCTAAGTGATGCTCAGAAACGTA TAGTGGAATCCCAAATAAAGGAAGCGGTTCTTAATGGTGTTGCTCTTGATGATGATAAAAGAGAGCAGTTTAACAAAATTGAACAGGAACTGACAAGATT ATCACAAAAATTTGGGGAAAATGTACTGGATGCCACAAAGAAGTTCGAAAAACTCATAACAGATAAGAAACATATTGAAGGATTGCCAGCTACATCACTT GGTTTGGCTGCGCAGACTGCAGTATCTAAGGGTCATGCAGACGCAACTGCTGAGAATGGGCCGTGGATAATTACATTGGATACCCCAAGTTTTATGTCTG TCATGCAACATGCCAAAAACCGTGGTTTACGTGAAGAAATATACCGTGCTCATGTAACTCGAGCTTCGAGTGGTGATCTGAATAATACAGCAATTATTGA TGAAATATTGAAGCTTAGGCTGGAAAAGGCAAAACTTCTTAATTACAACAACTTTGCTGAGGTAAGCATGGCAACCAAAATGGCTACTGTTGAGAAAGCA GAAGAGCTATTAGAAGAGCTGCGCATAGCTTCCTGGGATGCTGCTGCTCAAGATATGGAAGATCTTAAAATTTTCTCCAAAAATCAAGGTGCAATGGAAG CAAATGATTTGACTCACTGGGATACCAGCTTCTGGGCTGAGAGGCTTCGTGAGTCAAAATATGATATCAATGAGGAAGAACTACGTCCATTTTTCTCATT GCCAAAGGTTATGGATGGCCTTTTCAATCTTGCGAAGACACTTTTTGGAATTGATATTGAACCAGCTGATGGTCTTGCTCCAGTTTGGAATAATGATGTT AAATTCTACTGTGTCAAAGATTCCTTGGGCAATCCAATTGCATACTTCTACTTTGATCCATATTCACGTCCATCTGAGAAACAGGGTGGTGCATGGATGG ATGAGGTAGTTTCTCGAAGTCGTGTTTTGTCACGCAATGGTACGGCTCCAAGGTTGCCTATTGCCCACATGGTGTGCAATCAAACACCGCCTGTTGGGAC CAAACCAAGCCTGATGACATTTCGGGAGGTTGAGACTGTATTCCATGAATTTGGTCATGCCCTCCAGCATATGCTAACCAAGCAGGATGAGGGTCTTGTC GCTGGCATCCGGGGTATAGAGTGGGATGCTGTTGAATTACCCTCCCAGTTCATGGAAAATTGGTGTTATCACAGGGAAACTTTGATGGGCATTGCAAAGC ACTATGAAACTGGGGAAAGTCTTCCAGAAGAAGTGTATTTGAAGCTTCTTGCTGCAAGGACTTTCCGAGCAGGCTCCCTTAGTCTTCGTCAGCTAAGATT TGCAAGTTTAGATTTGGAGTTACACACGAAGTATATACCAGGTGCGTCGGAGTCTATCTATGAAGTTGACCGGAGGGTTTCTAAAAGGACACAAGTGATC CCTCCTTTGCCAGAAGATAGATTCCTCTGCAGTTTCAGTCATATTTTTGCAGGTGGTTATGCAGCTGGATACTACAGCTACAAGTGGGCTGAGGTATTAT CTGCAGATGCTTTTTCAGCCTTTGAGGATGCTGGATTGGATAACGACAAGGCTGTTAAAGAAACAGGGCACAAGTTCCGGGAAACCATTCTTGCTCTTGG AGGTGGAAAAGCACCACTAGCGGTTTTTGTCGAGTTCCGAGGGCGTGAACCTTCTCCAGAGGCACTGCTCAGGCACAATGGCTTGTTATCAGCGACAGCT TCAGCATTGTAG
AA sequence Show only first row Show all	>Potri.007G004600.1 pacid=42765596 polypeptide=Potri.007G004600.1.p locus=Potri.007G004600 ID=Potri.007G004600.1.v4.1 annot-version=v4.1 MATVVDESNPLLQDFEFPPFDVVEHKHVRPGIRALLKNLESDLEELERTVEPSWPKLVEPLEKITDQLAIVWGMINHLKAVKDSPELRAAIEEVQPEKVK FELRLGQSKPIYDAFKAIQESPQWTSLSDAQKRIVESQIKEAVLNGVALDDDKREQFNKIEQELTRLSQKFGENVLDATKKFEKLITDKKHIEGLPATSL GLAAQTAVSKGHADATAENGPWIITLDTPSFMSVMQHAKNRGLREEIYRAHVTRASSGDLNNTAIIDEILKLRLEKAKLLNYNNFAEVSMATKMATVEKA EELLEELRIASWDAAAQDMEDLKIFSKNQGAMEANDLTHWDTSFWAERLRESKYDINEEELRPFFSLPKVMDGLFNLAKTLFGIDIEPADGLAPVWNNDV KFYCVKDSLGNPIAYFYFDPYSRPSEKQGGAWMDEVVSRSRVLSRNGTAPRLPIAHMVCNQTPPVGTKPSLMTFREVETVFHEFGHALQHMLTKQDEGLV AGIRGIEWDAVELPSQFMENWCYHRETLMGIAKHYETGESLPEEVYLKLLAARTFRAGSLSLRQLRFASLDLELHTKYIPGASESIYEVDRRVSKRTQVI PPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLDNDKAVKETGHKFRETILALGGGKAPLAVFVEFRGREPSPEALLRHNGLLSATA SAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65620			Zincin-like metalloproteases f...		Potri.007G004600 [exp]	0	1
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Potri.016G038200 [exp]	7.34	0.7584	CBL.1
AT5G27410			D-aminoacid aminotransferase-l...		Potri.005G039100 [exp]	12.60	0.7563	Pt-AAT.3
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	13.45	0.7712	Pt-BRI1.2
AT5G67220			FMN-linked oxidoreductases sup...		Potri.007G047300 [exp]	20.49	0.7469
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	20.59	0.7483
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Potri.014G101400 [exp]	22.91	0.7135
AT5G07900			Mitochondrial transcription te...		Potri.015G038400 [exp]	26.83	0.7344
AT1G09290			unknown protein		Potri.010G099500 [exp]	31.22	0.6768
AT3G14840			Leucine-rich repeat transmembr...		Potri.003G026150 [exp]	31.93	0.7278
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Potri.014G028100 [exp]	33.40	0.7445

Compare expression of checked genes

Potri.007G004600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.