Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G67720 416 / 2e-130 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 404 / 1e-126 Leucine-rich repeat protein kinase family protein (.1) AT5G48740 397 / 6e-124 Leucine-rich repeat protein kinase family protein (.1) AT2G29000 392 / 3e-122 Leucine-rich repeat protein kinase family protein (.1) AT5G59680 392 / 6e-122 Leucine-rich repeat protein kinase family protein (.1) AT3G46400 390 / 4e-121 Leucine-rich repeat protein kinase family protein (.1) AT3G21340 385 / 2e-119 Leucine-rich repeat protein kinase family protein (.1) AT3G46350 383 / 1e-118 Leucine-rich repeat protein kinase family protein (.1) AT1G51850 382 / 1e-118 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132100 [exp] 462 / 2e-148 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.016G084900 [exp] 452 / 3e-144 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.008G181200 [exp] 448 / 8e-143 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G052800 [exp] 446 / 6e-142 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094700 [exp] 391 / 2e-121 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.002G242700 [exp] 379 / 9e-117 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094600 [exp] 377 / 3e-116 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 377 / 4e-116 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 305 / 2e-93 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019237 [exp] 1071 / 0 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10004275 [exp] 795 / 0 AT2G37050 374 / 3e-115 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10015057 [exp] 440 / 3e-139 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 439 / 6e-139 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 443 / 1e-137 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019907 [exp] 432 / 2e-136 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 420 / 1e-131 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025849 [exp] 385 / 5e-119 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10025926 [exp] 362 / 2e-110 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 338 / 5e-102 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.007G004700.3 pacid=42765823 polypeptide=Potri.007G004700.3.p locus=Potri.007G004700 ID=Potri.007G004700.3.v4.1 annot-version=v4.1 ATGATGGGAAGAATGCATGTTTGGATGTTAACAGCAAGTGTTGGCTCTTTTATTGTATCCCTCATCCATGTTATCCATTTAACCTGTGCAGAAAAAGGTT TTGTCAGCATAGCATGCTGTGCTGAATCATCAACTTTTACAGATAATACCACTATTAGCTGGATATCAGATGAGGGATGGTTCCCTATTGAGAATACAGG TTGCGAAAACATAACCAGACAAGCAGAAAATGATGCAAACTATGATAGAGTTCGAATTTTCTACATTGAACCAGGGAGGAGAATATGTTACAATTTTTCA ACTACTAAGAATCAAAACTATCTGATAAGGGCTACATTTCTCTTTGATGATTCTTTGGGTGCTTCTTTCGATGTTTCGATTGGTTTCACACCAACAAGTA ATGTGAAATTGTCCAAGGATTTGGAGGTTGAGAGAGTTTTTACAGCTACTCATCACGATGTAGACTTTTGCTTAATGAATCATTATGGATATCCATACAT TTCAAAGCTTGAACTGAGGCCCTTGGGGGATTTGAAGTATTTACAGGGAAAAGCTTCTGGTGTTTTGAAATTGGTTAGCAGAGTTGACGCAGGAAACACC GGAAATAGCATCAGGTACCCAGATGACTCATTTGACAGAATCTGGAGAAGACCTGACCCCAAAACGGTTTCCTTATCGGAACCGACTAATTCCACCACTT ACATCCATGATGTTAAGAAAACAGTGCCAGCCAAAGTTCTCCAAACAGCACTAACCCACACAGACAGACTGGAGTTCCTGCACAATGAACTTGACACACA GGATTCCAATTACACTGTGTTCCTCTACTTTTTTGAGCTCAATCAATCTATAAAAACTGGCCAAAGGGTATTTGACATTTACATTAATAATGAAATAAAG CTGGGGAAATTTGACATTTGGGCTTATGGGTCAGCCTATAGGGAAGCTGCTCTAAGTGTCACAGCAAGCAGGTCTCTAAACTTGACCTTAGTCAAGGTTG AAAATGCATCTGACCTCGGACCTATTTTAAATGCCTACGAGATCTTGCAATGGATTCAAGGAACTAACCAGCAAGATGTGGAAGTGATCATGAAGGTGAG AAATGAACTGATGCTGAATAACAAGGAGAATGAACTGCTGCAGAGTTGGTCAGGAGATCCATGCTTTCCTCCATGGAAAGGTCTGAAATGCCAGAACATC AGTGGGTCCTTACCTGTAATCACAGGACTGAATATTTCTTCAAGTCAATTTCAAGGACCAATTCCAGCCAGTATTACTGAGCTGAGCTACCTAAAGGAAT TGAACCTTAGCTACAATGGCTTCACTGGCAAGATCCCAGAGTTCCCGAAATCCTCAGTGTTGACATCAGTGGATCTGAGCTTCAATGATCTTTCTGGATC TGTTCCAGATTCTCTTGCCTCCCTTACAAATTTGAAAACATTATATTTCGGATGCAATCCTCTCTCCAGCACAGAACTTCCTTCCAACAGTTCAAGACTC ATTACAGATTTCGATTTCAGCTCTGGGAAATGTAGTAGACAGCGATCTACTAAAAAAACACTAGGAATTGTCATTGGAGCCATTACAGGTGGATCATTTC TGTTCACCTTAGCAGTCGGAATGTTTTGCAGTTGCTTCTGCAGAAACAAGTCAAGGACACGACGAAATTTCGATAGGAAATCAAACCCAATGACAAAGAA TGCTGTTTTCTCCGTAGCTAGCACTGTGTCAAAGTCGATAAACATTCAATCCTTTCCACTAGATTACTTAGAGAATGTGACCCACAAGTACAAAACCTTA ATAGGTGAAGGTGGGTTTGGATCCGTATACCGTGGCACTCTACCAGATGGTCAGGAAGTGGCAGTTAAGGTCCGGTCATCTACTTCAACTCAGGGGACTC GGGAATTCGATAATGAGCTAACCCTTCTATCAGCTCTTCGGCATGAGAACCTGGTGCCTCTTCTTGGTTATTGTTGTGAAAATGATCAACAAATTCTCGT TTATCCATTTATGTCCAATGGCTCTCTACAAGATCGCCTCTATGGAGAAGCAGCAAAGAGAAAAACTCTTGACTGGCCAACCAGACTTTCTATTGCTCTT GGTGCTGCTCGAGGTTTGACATATCTTCACACATTTTCTGGCCGTTGCATTATACATAGAGATGTCAAGTCAAGCAACATCCTTCTGGATCATAGCATGA ATGCTAAGGTGACAGACTTCGGCTTCTCAAAGTATGCTCCTCAAGAAGGAGACAGTGGTGCTTCACTGGAAGTAAGAGGCACAGCTGGGTACTTGGATCC AGAGTACTACTCGACACAACATCTTTCTGCAAAAAGTGATGTCTTTAGCTTTGGGGTGGTTCTACTTGAAATCGTAAGTGGTCGGGAGCCTCTCAACATA CACAGGCCACGAAATGAGTGGAGCTTAGTTGAATGGGCAAAGCCATATATAAGGGAGTCAAGGATTGATGAAATTGTGGATCCTGGCATAAAGGGTGGGT ACCATGCAGAGGCAATGTGGAGAGTGGTAGAGGTAGCACTAGTATGCATTGAGCCCTTCTCTGCTTATCGACCATGCATGACTGACATTGTTCGGGAGCT AGAGGATGCTTTGATCATAGAAAACAACGCATCTGAATATATGAAGTCCATAGACAGTTTGGGAGGATACAGCTTGGGAGGGTCCAATCGCTTTGGTTCC AATCGCTTCTCAATTTCCACAGACAAGAAGATCGCTTTATCACCACCGGTTCCAACGCCACCAGACCCATCACCAATCAACACACAAGCCTTGGCTCCTC TAGAGCCGAGATAG
AA sequence Show only first row Show all	>Potri.007G004700.3 pacid=42765823 polypeptide=Potri.007G004700.3.p locus=Potri.007G004700 ID=Potri.007G004700.3.v4.1 annot-version=v4.1 MMGRMHVWMLTASVGSFIVSLIHVIHLTCAEKGFVSIACCAESSTFTDNTTISWISDEGWFPIENTGCENITRQAENDANYDRVRIFYIEPGRRICYNFS TTKNQNYLIRATFLFDDSLGASFDVSIGFTPTSNVKLSKDLEVERVFTATHHDVDFCLMNHYGYPYISKLELRPLGDLKYLQGKASGVLKLVSRVDAGNT GNSIRYPDDSFDRIWRRPDPKTVSLSEPTNSTTYIHDVKKTVPAKVLQTALTHTDRLEFLHNELDTQDSNYTVFLYFFELNQSIKTGQRVFDIYINNEIK LGKFDIWAYGSAYREAALSVTASRSLNLTLVKVENASDLGPILNAYEILQWIQGTNQQDVEVIMKVRNELMLNNKENELLQSWSGDPCFPPWKGLKCQNI SGSLPVITGLNISSSQFQGPIPASITELSYLKELNLSYNGFTGKIPEFPKSSVLTSVDLSFNDLSGSVPDSLASLTNLKTLYFGCNPLSSTELPSNSSRL ITDFDFSSGKCSRQRSTKKTLGIVIGAITGGSFLFTLAVGMFCSCFCRNKSRTRRNFDRKSNPMTKNAVFSVASTVSKSINIQSFPLDYLENVTHKYKTL IGEGGFGSVYRGTLPDGQEVAVKVRSSTSTQGTREFDNELTLLSALRHENLVPLLGYCCENDQQILVYPFMSNGSLQDRLYGEAAKRKTLDWPTRLSIAL GAARGLTYLHTFSGRCIIHRDVKSSNILLDHSMNAKVTDFGFSKYAPQEGDSGASLEVRGTAGYLDPEYYSTQHLSAKSDVFSFGVVLLEIVSGREPLNI HRPRNEWSLVEWAKPYIRESRIDEIVDPGIKGGYHAEAMWRVVEVALVCIEPFSAYRPCMTDIVRELEDALIIENNASEYMKSIDSLGGYSLGGSNRFGS NRFSISTDKKIALSPPVPTPPDPSPINTQALAPLEPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	0	1
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.007G100700 [exp]	1.00	0.9844
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.002G149300 [exp]	1.41	0.9804
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Potri.002G041600 [exp]	2.23	0.9744
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.006G089800 [exp]	2.44	0.9739
AT4G14746			unknown protein		Potri.005G051900 [exp]	4.89	0.9776
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	5.74	0.9776
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.003G091300 [exp]	7.34	0.9711
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.003G106900 [exp]	7.54	0.9622	2OGox20
AT1G30760			FAD-binding Berberine family p...		Potri.001G463400 [exp]	8.00	0.9730
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.018G070900 [exp]	8.36	0.9709

Compare expression of checked genes

Potri.007G004700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.