Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55100 266 / 6e-79 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55130 256 / 7e-75 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55090 248 / 1e-71 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 246 / 6e-71 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55110 245 / 8e-71 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT2G37360 244 / 5e-70 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G53510 237 / 1e-67 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT5G13580 236 / 3e-67 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT1G17840 201 / 5e-55 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT1G31770 181 / 3e-48 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045100 [exp] 586 / 0 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1) Potri.015G036100 [exp] 580 / 0 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 256 / 2e-74 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 253 / 2e-73 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 252 / 7e-73 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 251 / 9e-73 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 248 / 8e-72 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.018G152600 [exp] 211 / 1e-58 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.004G236500 [exp] 184 / 2e-49 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004274 [exp] 980 / 0 AT2G37360 296 / 2e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10019238 [exp] 976 / 0 AT2G37360 296 / 1e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10039859 [exp] 588 / 0 AT2G37360 319 / 5e-97 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10018624 [exp] 586 / 0 AT2G37360 316 / 7e-96 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 479 / 4e-160 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 290 / 1e-87 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 247 / 3e-71 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 241 / 1e-68 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10030306 [exp] 181 / 8e-51 AT5G13580 573 / 0.0 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) Lus10033315 [exp] 177 / 7e-49 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.007G004800.1 pacid=42766285 polypeptide=Potri.007G004800.1.p locus=Potri.007G004800 ID=Potri.007G004800.1.v4.1 annot-version=v4.1 ATGGCACACAAAAATATTGGTAATCGTCAAGAAGCTGTTATTGATATAGTTAAGCCAATCAGTTTCACGGGAGGGCTAGAGTTCTCCAGCCTCACCTACA CTGTGACTAAAAGTCAGAAGCTTGAAGGGAAATGGATAAAGCAAAAGGTGGACTTGCTGAATAGGATTACTGGTTATGCACCAAAAGGGTGTATTACTGC AGTCATGGGGCCTAGCGGTGCTGGAAAATCCACCTTGTTAGATGGACTTGCTGGCCGTATCTCAAGCGGGAGCCTTAAGGGTAGAGTCTCACTGGATGGC ATGGAAATGAGTCCGAGCTTGATTAAGAGGACTTCTGCCTATATTATGCAGGACGACAGGTTGTTTCCTACACTTACAGTCTACGAGACTTTGATGTTTG CTGCTGATTTTCGGCTTGGACAAATCTCAAGAGCTGACAAGAAGCAGCGTGTAGAGAAGCTCATCGAGCAGCTTGGTTTATCGTCATCTCGGAACACCTA TATCGGCGATGAAGGCACACGGGGAGTGTCCGGTGGTGAGCGTCGCAGAGTATCAATTGGCGTGGACATTATCCATGGACCATCACTACTTTTCCTTGAC GAGCCCACTTCAGGTCTAGACTCGACCAGTGCTCATAGTGTCATAGAAAAGGTGCACCACATCGCAAGGTCAGGAAGTACTGTGATCCTTACAATTCATC AACCATCATCTAGAATCCAATTGCTGCTTGATCATCTCATTATTCTAGCTCGTGGGCAACTGATGTATCAAGGATCACCTAAAGATGTCACCCTTCATCT CAGTCGCATGGGGCGGAAGGTCCCTAAAGGTGAAAACTCAATAGAGTACCTTATTGATGCGATACAAGAGTATGATCAATCCGAGCTTGGTGTGGAGGCA CTGGCTGAATTTGCACGTACTGGAATGAAACCACCTCTATTGTCCAATGGGGACGTGTCTATATCGACCATCGCGCCAACACCGCCCCTGCGTCACAGTA GCCACCATCAGAAGGGTGGTAGGCCAGGTGATAGGCCGAATGATGGTAAGCGCCTTCATTTACAAACAAGCACACACGAACCTAATGAATTTGATCACAG TGTGAGAAGTCCTTTCAATAACACATCGAGGTCATGGAGTGCTAGTCATAGTGGAGTGGTGCAGACCCTTAGATTTACGCCTTCACGCCAAAGGAACGAT AAGACAATTCAAAATCCAATGAGCTCATCCCCAGGCTACTATACATTCTCAAGCGAGATCCTCCCTGGGACACCAACACCGCACAGCAGTGACTACACGG TGAACGAAAACGACTACCTGACCCCAAATGTTCCTCAAAAAACACATCTCCTTGGTCCAAAATTTACAAATTCCTTTTTCTCAGAGACCTGGATTCTCAT GCGTCGCAACTTCAAGAACATTAGGCGTACCCCAGAGCTTTTCCTCTCAAGACTCATGGTCCTGACTGTCATGGGGTTCATGATGGCCACGATGTTTATG CACCCTAAACAAGATTTGCAAGGAATCACTAATCGTCTCAGTTTCTTCATCTTCACGGTTTGCCTTTTCTTCTTCTCATCCAATGATGCTGTTCCTGCCT TCATCCAAGAACGCTTCATTTTCGTCCGCGAAACTTCCCATAATTCTTATAGAGCCTCTTCCTACACAATTGCTGGTCTTATTACATACCTTCCCTTTCT TGCATTACAATCTGGCGTCTATGCTTGTATTGTTTGGAAAGCCTTGGGGCTACGAGGACCATTCTTTTATTTCTTGCTGGTCCTCTATATGTCCCTTCTT TCAACCAACTCATTTGTGGTGTTTGTGAGCTCAGTGGTGCCAAATTACATTCTGGGTTATGCAGCAGTCATTGCTTTCACTGCACTATTTTTCTTGTTTT GTGGCTACTTCTTGAATAGCCATGATATCCCCATATATTGGAGGTGGATGAACAAGATCTCCACTATGACATACTCATACGAAGGGCTTCTGATGAACCA GTACCAGACATCGGATCCTTTTGGAATAAATCCTGCTGGACAAATTGTCAACGGCACCACCATCTTAAAATCACTCGGTATTAGCACCGATGAATCGAAG AAGTGGGAGAACGTGCTTGTGATGTTGGGCTGGGCTGTTCTATACAGGATTTTTTTCTACATAGTTCTTCGGTTCTTTTCCAAGAACCAGAGGTCATAG
AA sequence Show only first row Show all	>Potri.007G004800.1 pacid=42766285 polypeptide=Potri.007G004800.1.p locus=Potri.007G004800 ID=Potri.007G004800.1.v4.1 annot-version=v4.1 MAHKNIGNRQEAVIDIVKPISFTGGLEFSSLTYTVTKSQKLEGKWIKQKVDLLNRITGYAPKGCITAVMGPSGAGKSTLLDGLAGRISSGSLKGRVSLDG MEMSPSLIKRTSAYIMQDDRLFPTLTVYETLMFAADFRLGQISRADKKQRVEKLIEQLGLSSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLD EPTSGLDSTSAHSVIEKVHHIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMYQGSPKDVTLHLSRMGRKVPKGENSIEYLIDAIQEYDQSELGVEA LAEFARTGMKPPLLSNGDVSISTIAPTPPLRHSSHHQKGGRPGDRPNDGKRLHLQTSTHEPNEFDHSVRSPFNNTSRSWSASHSGVVQTLRFTPSRQRND KTIQNPMSSSPGYYTFSSEILPGTPTPHSSDYTVNENDYLTPNVPQKTHLLGPKFTNSFFSETWILMRRNFKNIRRTPELFLSRLMVLTVMGFMMATMFM HPKQDLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFVRETSHNSYRASSYTIAGLITYLPFLALQSGVYACIVWKALGLRGPFFYFLLVLYMSLL STNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLNSHDIPIYWRWMNKISTMTYSYEGLLMNQYQTSDPFGINPAGQIVNGTTILKSLGISTDESK KWENVLVMLGWAVLYRIFFYIVLRFFSKNQRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55100		ABCG17	ATP-binding cassette G17, ABC-...		Potri.007G004800 [exp]	0	1
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Potri.005G120901 [exp]	15.16	0.9139
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.009G037100 [exp]	22.31	0.9081
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.002G195600 [exp]	26.83	0.9052
AT3G20190			Leucine-rich repeat protein ki...		Potri.018G002600 [exp]	32.12	0.9051
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.010G118200 [exp]	35.28	0.9018
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212700 [exp]	39.64	0.9010	Pt-BETV1.5
AT1G59740			Major facilitator superfamily ...		Potri.004G064100 [exp]	43.15	0.9009
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213669 [exp]	46.21	0.9009
					Potri.002G067000 [exp]	47.01	0.8406
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	48.92	0.9008	PtrAMT4-2

Compare expression of checked genes

Potri.007G004800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.