Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67570 863 / 0 EMB246, DG1, EMB1408 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G30610 400 / 1e-124 EMB88, EMB2279 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT5G02860 133 / 9e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 105 / 5e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 96 / 2e-20 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G31400 96 / 8e-20 GUN1 genomes uncoupled 1 (.1) AT4G31850 93 / 6e-19 PGR3 proton gradient regulation 3 (.1) AT3G16010 92 / 7e-19 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G17140 91 / 2e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 90 / 3e-18 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G459900 [exp] 405 / 3e-125 AT1G30610 782 / 0.0 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.009G092100 [exp] 129 / 2e-30 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 121 / 6e-28 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G297300 [exp] 117 / 1e-26 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 97 / 3e-20 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.010G035700 [exp] 96 / 6e-20 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.006G049900 [exp] 96 / 7e-20 AT2G41720 1169 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G109500 [exp] 93 / 3e-19 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G276500 [exp] 91 / 1e-18 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025202 [exp] 921 / 0 AT5G67570 800 / 0.0 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012091 [exp] 901 / 0 AT5G67570 805 / 0.0 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023384 [exp] 381 / 6e-118 AT1G30610 734 / 0.0 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10002107 [exp] 118 / 5e-27 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015530 [exp] 111 / 7e-25 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 109 / 3e-24 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 107 / 2e-23 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 100 / 3e-21 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013894 [exp] 100 / 4e-21 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003657 [exp] 99 / 4e-21 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.007G004900.1 pacid=42765155 polypeptide=Potri.007G004900.1.p locus=Potri.007G004900 ID=Potri.007G004900.1.v4.1 annot-version=v4.1 ATGGAAGCTGCAATAGCTTCTTCCTCATCTTCTCTACCCCAATTCGAACCAAACATTGAAGCCATAAAACGAAGGCTACTGAAAAGAGGGGTGTACCCAA CTCCCAAAATAGTCCATAATCTCCGCAAGAAAGAAATCCAAAAGCACAACCGCAAACTCAACAAAGATGTTGAATTCCAAAGACAAGCCCTTTTTGTTTT AGAAGAAGAATCCCATTTTCAAGCTTTAAAACATGAATACAAAGAGTTTAATAAGGCAATAAGTGAGGAAAGAAGGGGTGAGAGTGGAGGGGGTTTGTTA GTGGGGAAGCCATGGGAGAGAATAGAGAGAGTGAAGTTGAAAGAGATTGGTAGTGGAAGTAGGGAGTTTAATGGAGGTAAGTTAAAGAGAGAGAATTTGA GACAGTTGAAGGAGGTTTTTGAGGGTAATTTGAAGTGGGTTTTTGATGATGATATTGATGTGGAAGACAGTGATTGGTTGAGAAGTGGTAGTGAAGAGAA ATGGGACCCTGCGAAGCGGTGGCGTGGAGAAGGGGAGGCAATTCGGTTTCTTGTTGATAGGTTAAGTTGCAGGGAGGTAAGTGTAAAGGATTGGAAGTTA GCCAAGATAATGAAGCAGTCAGGGTTGAGGTTTAGTGAAGGTCAGTTGCTGAAGATTGTGGAGGAACTTGGGAACAAAGGTAAATGGTCACAGGCAATGG CTGTTGTGGAATGGGTGTATAATGACAAGGAACGTAGAGATTGTAAGAGCAGGTTTGTTTACACAAAACTCTTGTCAGTTCTTGGGAAGGAAAGGAGGGC CCAGGAAGCACTTAGCATTTTTAATCTGATGCGTGAAGACCGCAGAATATATCCTGATATGGCTGCATATCACAGTATTGCTGTTACACTCGGCCAAACT GGTCTTCTGAAAGAGTTGGTGAAAGTTATTGAATGCATGAGGCAGAAACCTTCTAAACGAATCAATAAAATGCTTAACAAGAACTGGGACCCAGTCCTTG AACCAGATCTGGTTATATATAATGCTATACTGAATGCTTGTGTTCCATCCCAGCAGTGGAAAGGTGTATCATGGGTTTTTCAACAGTTGAGAAGAAGTGG TCTTAAACCCAATGGAGCAACGTATGGATTAGCAATGGAGGTAATGCTGCTTTCTGGAAAGTACAAATCTGTCCATGAGTACTTCAGGAAAATGAAGAAA AGCGGGGAATCTCTAAAAGCCCTTACATACAAAGTTCTTGTGAGAGCGTTTTGGGAGGAAGGTAGAGTCAATGAAGCTGTGGAAGCAGTGAGGGACATGG AACAAAGAGGAGTAGTTGGAGCAGCCAGCGTATATTATGAGCTAGCTTGCTGCCTTTGCTACAATGGGAGGTGGCAAGATGCTATGCTAGAGGTTGAGAA AATGAAAAGACTCCGTTATAAGAAGCCTTTGGAGGTATCTCTCACTGGAATGATAGCGTCTTCTATGGATGGTGGGCATATTGATAATTGCATATCTATC TTTGAACACATGAAAGCCCATTGTGTCCCTAACATTGGGACCATAAACACTATGCTGAAAGTTTATAGCCGAAGTGATTTGTTCTCTGAAGCTAAGGAGT TGTTTGAGGACATTAAGGGAGTTGATCATAGTGGCACTACCATTATACCAGATGGGTACACGTACAGTTCAATGCTTGAGGTATCTGCTCGTGCACTCCA ATGGGAATACTTTGAGTATGTTTACAAGGAGATGTCTTTCTCTGGGTATCAGCTAGATCAAATTAAACATGCGCCATTGCTTGTGGAAGCATCTAGATCT GGAAAGAATCATCTTCTGGAGCATGCATTTGATGAAATTTTGGAAGCTGGAGAAATCCCTCATCCACTGCTCTTCACTGAAATGGTATTTCAAGCCACAG CTCAAGAGAATTATGAGAGGGCTGTCACTCTTATTAACACCATGGCTCATGCCTCATTTCAAATTAGTGAAAGGCAGTGGACAGATCTTTTCGAGAAAAA TGGAGAAAAAATCAGTCAGGATAGTTTAGAGAAGCTGTTGGATGCAGTTGGTCATTGTCGTATGGCATCAGAGGTCACAGTCTCTAACTTGTCAAGATCA TTGCGGTCTCTATGCAGGCCTGGCTCATCAGGAGATTTACCCCGCACCAATTCTTGCATTGAAGACACTGATGATACTCATATCAATACTAACAGTGGGG AAATTGCAGGCAATAGGAGCGCATATATGCTAACCACTTCTGCAAGTATGGTAGATGGAAATCTCGAGCTGGATGAGGATACTTTTGTTAATAAAACTAG CATCACTCCAGATATGTCCCTTGTTAATAACAGTAGTACCAACAGAGAGGGTGATGATCCGGAAGCAGCCTCTAGCACTGGAAACTCTGTTAATGGCCTG GATGTAGCCACAAACCTATTAGTGAAGAGGGATGTTTTTGCTGATGATGTGGCATCTGGTGCTTCTACTGATTGTTTAGACAAGAAGCTCTCAAATATTT TATTAGAAGAGTCTGAGAAAGATGCTGAAGAGGTAGAGCTTGAAATAGGAACAACGGAAGCTAATGATCTGTATAGATCTGAATTGCCCTCAGCTCATGC CATACTAGATGTTTGGAAGGAAAGCAGGAAAAAAGGATAG
AA sequence Show only first row Show all	>Potri.007G004900.1 pacid=42765155 polypeptide=Potri.007G004900.1.p locus=Potri.007G004900 ID=Potri.007G004900.1.v4.1 annot-version=v4.1 MEAAIASSSSSLPQFEPNIEAIKRRLLKRGVYPTPKIVHNLRKKEIQKHNRKLNKDVEFQRQALFVLEEESHFQALKHEYKEFNKAISEERRGESGGGLL VGKPWERIERVKLKEIGSGSREFNGGKLKRENLRQLKEVFEGNLKWVFDDDIDVEDSDWLRSGSEEKWDPAKRWRGEGEAIRFLVDRLSCREVSVKDWKL AKIMKQSGLRFSEGQLLKIVEELGNKGKWSQAMAVVEWVYNDKERRDCKSRFVYTKLLSVLGKERRAQEALSIFNLMREDRRIYPDMAAYHSIAVTLGQT GLLKELVKVIECMRQKPSKRINKMLNKNWDPVLEPDLVIYNAILNACVPSQQWKGVSWVFQQLRRSGLKPNGATYGLAMEVMLLSGKYKSVHEYFRKMKK SGESLKALTYKVLVRAFWEEGRVNEAVEAVRDMEQRGVVGAASVYYELACCLCYNGRWQDAMLEVEKMKRLRYKKPLEVSLTGMIASSMDGGHIDNCISI FEHMKAHCVPNIGTINTMLKVYSRSDLFSEAKELFEDIKGVDHSGTTIIPDGYTYSSMLEVSARALQWEYFEYVYKEMSFSGYQLDQIKHAPLLVEASRS GKNHLLEHAFDEILEAGEIPHPLLFTEMVFQATAQENYERAVTLINTMAHASFQISERQWTDLFEKNGEKISQDSLEKLLDAVGHCRMASEVTVSNLSRS LRSLCRPGSSGDLPRTNSCIEDTDDTHINTNSGEIAGNRSAYMLTTSASMVDGNLELDEDTFVNKTSITPDMSLVNNSSTNREGDDPEAASSTGNSVNGL DVATNLLVKRDVFADDVASGASTDCLDKKLSNILLEESEKDAEEVELEIGTTEANDLYRSELPSAHAILDVWKESRKKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Potri.007G004900 [exp]	0	1
AT1G78810			unknown protein		Potri.011G109600 [exp]	2.00	0.8432
AT1G77800			PHD finger family protein (.1....		Potri.005G171800 [exp]	2.82	0.8636
AT3G60400			Mitochondrial transcription te...		Potri.014G044900 [exp]	3.46	0.8434
AT2G29200		APUM1	pumilio 1 (.1)		Potri.010G201100 [exp]	5.29	0.8507
AT1G17450			B-block binding subunit of TFI...		Potri.003G064000 [exp]	5.47	0.8395
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Potri.015G050800 [exp]	7.07	0.8417
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121601 [exp]	7.34	0.8324
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Potri.002G181400 [exp]	8.77	0.8307	SIN1.1,DCL902
AT1G27900			RNA helicase family protein (....		Potri.010G057200 [exp]	8.94	0.8315
AT5G64420			DNA polymerase V family (.1)		Potri.001G285600 [exp]	10.00	0.8108

Compare expression of checked genes

Potri.007G004900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.