Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67590 214 / 2e-72 FRO1 FROSTBITE1, NADH-ubiquinone oxidoreductase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G117800 [exp] 212 / 1e-71 AT5G67590 198 / 4e-66 FROSTBITE1, NADH-ubiquinone oxidoreductase-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011547 [exp] 232 / 3e-79 AT5G67590 213 / 7e-72 FROSTBITE1, NADH-ubiquinone oxidoreductase-related (.1) Lus10019261 [exp] 228 / 8e-78 AT5G67590 211 / 4e-71 FROSTBITE1, NADH-ubiquinone oxidoreductase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04800 [poplar] [flax] ETC_C1_NDUFA4 ETC complex I subunit conserved region
Representative CDS sequence Show only first row Show all	>Potri.007G005100.1 pacid=42765224 polypeptide=Potri.007G005100.1.p locus=Potri.007G005100 ID=Potri.007G005100.1.v4.1 annot-version=v4.1 ATGTCGAGTTCTCTGCCAAAAATCTGGAAAAATGGTTGCGCCCTTCGAGCAAGCAGCATAGGCCCATTATGGAGGAGGCCGTTCTCCGCTTCTTCCGATG CATTGGTAGAGTACAAAGCTGGGGAGATCGGCATGGTCTCTGGCATCCCCCAAGACCACCTTCGCAGGAGAGTTGTCATTTACTCACCTGCTAGAACTTC AACCCAACAAGGATCTGGAAAAGTTGGAAGGTGGAAAATCAATTTTATGTCAACACTAAAGTGGGAGAATCCATTGATGGGGTGGACATCTACAGGGGAT CCATATGCCCATGTGGGTGATTCTGCACTCGGTTTTGACAGTGAAGAAGCTGCAAAGGCATTTGCTGAGCGTCATGGTTGGGAGTATGTGGTTAAAAAGC GCCACACACCGCTATTGAAGGTTAAGGCATATGCAGACAACTTCAAATTCAAGGGGCATCCCAAGACTGATGACAAATAA
AA sequence Show only first row Show all	>Potri.007G005100.1 pacid=42765224 polypeptide=Potri.007G005100.1.p locus=Potri.007G005100 ID=Potri.007G005100.1.v4.1 annot-version=v4.1 MSSSLPKIWKNGCALRASSIGPLWRRPFSASSDALVEYKAGEIGMVSGIPQDHLRRRVVIYSPARTSTQQGSGKVGRWKINFMSTLKWENPLMGWTSTGD PYAHVGDSALGFDSEEAAKAFAERHGWEYVVKKRHTPLLKVKAYADNFKFKGHPKTDDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Potri.007G005100 [exp]	0	1
AT2G25310			Protein of unknown function (D...		Potri.018G024600 [exp]	2.64	0.8973
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Potri.009G004500 [exp]	3.00	0.8944
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.013G051500 [exp]	4.24	0.9196
AT1G67785			unknown protein		Potri.015G087301 [exp]	6.48	0.9006
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.009G020800 [exp]	8.00	0.9119	PAG1.2
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.008G155500 [exp]	8.36	0.9007	Pt-PBD2.3
AT4G37830			cytochrome c oxidase-related (...		Potri.007G008800 [exp]	8.83	0.9104
AT3G03070			NADH-ubiquinone oxidoreductase...		Potri.013G082100 [exp]	10.48	0.8734
AT3G04780			Protein of unknown function (D...		Potri.013G039500 [exp]	10.95	0.9024
AT4G34720		ATVHA-C1, AVA-P...	VACUOLAR H+-PUMPING ATPASE C1,...		Potri.009G125000 [exp]	12.72	0.8697	Pt-AVAP5.2

Compare expression of checked genes

Potri.007G005100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.