Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67610 400 / 1e-135 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) AT3G49840 369 / 1e-123 Uncharacterized conserved protein (DUF2215) (.1) AT1G28760 207 / 5e-61 Uncharacterized conserved protein (DUF2215) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G064800 [exp] 248 / 2e-76 AT1G28760 416 / 2e-141 Uncharacterized conserved protein (DUF2215) (.1) Potri.019G039300 [exp] 194 / 3e-57 AT1G28760 320 / 1e-106 Uncharacterized conserved protein (DUF2215) (.1) Potri.014G003451 [exp] 65 / 1e-12 ND / Potri.019G039401 [exp] 57 / 2e-10 AT1G28760 44 / 2e-06 Uncharacterized conserved protein (DUF2215) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019263 [exp] 505 / 2e-176 AT5G67610 441 / 2e-151 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) Lus10011548 [exp] 478 / 3e-159 AT4G37670 763 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Lus10034420 [exp] 219 / 3e-65 AT1G28760 413 / 8e-141 Uncharacterized conserved protein (DUF2215) (.1) Lus10019140 [exp] 144 / 2e-37 AT5G67610 320 / 6e-105 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10225 [poplar] [flax] NEMP NEMP family
Representative CDS sequence Show only first row Show all	>Potri.007G005500.1 pacid=42765784 polypeptide=Potri.007G005500.1.p locus=Potri.007G005500 ID=Potri.007G005500.1.v4.1 annot-version=v4.1 ATGGGCACTGCAAAACCCTACCTTTCCATTCTCTCCCTTCTCCTCTTTTTCACCTTTTCAATATATTCCTCATCTGCCCTTCCACATCAACTCTCCTTAG TTGTTGGTGAGGCCAGTAGTAGTAAAGTGCAAATTTCTCCAAGCTTGCAAGTTGTGAACTCTCCGGGGACAAAGCCGGGGACACGGGTGCTTTGCGAAAG AGTTGATGTCCATGGGTTTCCGAGGCTTAAAAATTTGAATAAGTTTTTTCATTCTTTGATGCTCAAAATTTCACCTTCTAATTCCACTCTTCGCAGACCC ATTGTTGAGGTTTGTTTTCACAGGAATGCGTCTCGTGCTATAGGGATGTGTCCGCAGGGCGAGTGGGAGAAGGTTGATAAGGGTGGTTCATGGGTTCGAG CCATGTCACCTTATGCCCACAAGTTCTTAGATATAAGGATGGCTGGTTCATCCTCGGAAACCCTTGAACTGTCAATTGAAGAAGGGTTTTTCTTGTATCG TGTGATATTCTTAATCCTGGGAGTGGTTATGCTAAGCATCGCATCCTCTTTAAGCAAGTCTTTGGTATTTTACTACAGCAGTGCCATGGCAATTGGAATC ATCCTTGTAATACTCGTGGTCCTTTTTCAGGGAATGAAGCTTCTGCCGACAGGTCGAAAGAGCTCGCTTGCAATTTTTATATACTCATCACTTGTTGGCT TGGGAACTTTTCTACTTCGCTACTTGCCAGGATTGTTGCATTCAATACTCATGGAGATGGGGATAAGCGAAGACATGTATTATCCTTTGGCGATTTTTCT GCTGGCTTTTATTGCTTTTATTGGAGCATGGATGGGTTTCTGGGCTGTCCGCAGTTTTGTCTTGACAGAAGATGGATCCGTTGATATAAGCACATCTCAT TTTGTTGCCTGGTCCATTCGTGTCTTGGCTGTTGTGTTAATTATCCAGAGTTCTCTGGATCCCTTGCTGGCAGCAGAAGCTTTAATATCTGGAATAATTG TCTCGTCAATACTAAGGAGAATTTTTAGATGGAGATTCCTGCGTCAAATGTACAAGAAGTTGTTTAAATTAGCGAGAAACATAAATAGAGAATCACTTGT TCCTGATCTATCACCATTTGGAGGTTCTCGTGATAAATACACGGTTGAGAGGCCTGAAGGCTCAAAGTTCCTTTCTCCGCGGCCCAAACAATTCAACCTG GCTTCATGCAATTCTATGAAAGGTTCAAGCAGGACATCACGTCATCAACTGTCAGATTCAGATGTCTACCCATCTACCTTCCATACCACTCCCGAGAGGA GGAAACTTTCAAAAGATTCATGGGAAAAATTTACCAGAGAGTCCACGCAAAAAGCTGTTAAAGAACTTGTTTCTTCCCCCGATTTCAGCAAATGGGCAGC TGCTAACGCAGAAAGAATCACTGTGACCCCAAACTCCACCACCAGTACTTCAAGGCAGCAGCGTCGCAAGTGGTTCCTTTGGTCTTGA
AA sequence Show only first row Show all	>Potri.007G005500.1 pacid=42765784 polypeptide=Potri.007G005500.1.p locus=Potri.007G005500 ID=Potri.007G005500.1.v4.1 annot-version=v4.1 MGTAKPYLSILSLLLFFTFSIYSSSALPHQLSLVVGEASSSKVQISPSLQVVNSPGTKPGTRVLCERVDVHGFPRLKNLNKFFHSLMLKISPSNSTLRRP IVEVCFHRNASRAIGMCPQGEWEKVDKGGSWVRAMSPYAHKFLDIRMAGSSSETLELSIEEGFFLYRVIFLILGVVMLSIASSLSKSLVFYYSSAMAIGI ILVILVVLFQGMKLLPTGRKSSLAIFIYSSLVGLGTFLLRYLPGLLHSILMEMGISEDMYYPLAIFLLAFIAFIGAWMGFWAVRSFVLTEDGSVDISTSH FVAWSIRVLAVVLIIQSSLDPLLAAEALISGIIVSSILRRIFRWRFLRQMYKKLFKLARNINRESLVPDLSPFGGSRDKYTVERPEGSKFLSPRPKQFNL ASCNSMKGSSRTSRHQLSDSDVYPSTFHTTPERRKLSKDSWEKFTRESTQKAVKELVSSPDFSKWAAANAERITVTPNSTTSTSRQQRRKWFLWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67610			Uncharacterized conserved prot...		Potri.007G005500 [exp]	0	1
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019833 [exp]	2.00	0.8091
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.004G185200 [exp]	10.24	0.8025
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.009G145200 [exp]	11.83	0.7548
AT1G80700			unknown protein		Potri.003G180500 [exp]	24.73	0.7899
AT1G60770			Tetratricopeptide repeat (TPR)...		Potri.018G079600 [exp]	24.79	0.7864
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Potri.007G000500 [exp]	25.09	0.7641
AT5G15700			DNA/RNA polymerases superfamil...		Potri.017G105801 [exp]	26.38	0.6978
AT3G48210			unknown protein		Potri.012G088000 [exp]	27.36	0.7743
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.006G143500 [exp]	28.35	0.7855
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.014G076600 [exp]	34.74	0.7436

Compare expression of checked genes

Potri.007G005500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.