Plant FIBer expression Database

Potri.007G005800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37680 612 / 0 HHP4 heptahelical protein 4 (.1.2)
AT4G38320 580 / 0 HHP5 heptahelical protein 5 (.1)
AT4G30850 250 / 5e-80 HHP2 heptahelical transmembrane protein2 (.1.2)
AT2G24150 244 / 1e-77 HHP3 heptahelical protein 3 (.1)
AT5G20270 223 / 8e-70 HHP1 heptahelical transmembrane protein1 (.1)
AT2G40710 177 / 3e-55 Haemolysin-III related integral membrane protein (.1)
AT4G38290 148 / 1e-43 Haemolysin-III related integral membrane protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G006000
[exp]
748 / 0 AT4G37680 632 / 0.0 heptahelical protein 4 (.1.2)
Potri.T124407
[exp]
308 / 2e-102 AT5G20270 385 / 2e-133 heptahelical transmembrane protein1 (.1)
Potri.018G124754
[exp]
308 / 3e-102 AT5G20270 384 / 4e-133 heptahelical transmembrane protein1 (.1)
Potri.018G102400
[exp]
282 / 2e-92 AT4G30850 374 / 5e-129 heptahelical transmembrane protein2 (.1.2)
Potri.006G064400
[exp]
275 / 2e-89 AT5G20270 369 / 2e-127 heptahelical transmembrane protein1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025206
[exp]
634 / 0 AT4G37680 584 / 0.0 heptahelical protein 4 (.1.2)
Lus10011713
[exp]
633 / 0 AT4G37680 585 / 0.0 heptahelical protein 4 (.1.2)
Lus10010605
[exp]
447 / 2e-156 AT4G37680 464 / 7e-164 heptahelical protein 4 (.1.2)
Lus10038120
[exp]
214 / 4e-66 AT5G20270 377 / 3e-131 heptahelical transmembrane protein1 (.1)
Lus10008057
[exp]
214 / 1e-65 AT5G20270 394 / 6e-137 heptahelical transmembrane protein1 (.1)
Lus10036605
[exp]
165 / 4e-47 AT4G30850 259 / 3e-84 heptahelical transmembrane protein2 (.1.2)
Lus10035823
[exp]
97 / 2e-21 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Lus10007709
[exp]
49 / 6e-07 ND 47 / 2e-10
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0192 GPCR_A PF03006 HlyIII Haemolysin-III related
Representative CDS sequence
>Potri.007G005800.1 pacid=42766488 polypeptide=Potri.007G005800.1.p locus=Potri.007G005800 ID=Potri.007G005800.1.v4.1 annot-version=v4.1
ATGGCTGGTGTAAATGAAATGATTGAGGGTTCGGAGCTGATAACTGAAACAATTGAGAAGCTCCCAGCAACTGTTTCAAGGGAAGGAAAAGGGAAGAGAT
TATGTAACAAAGCTCAGTATCAGCTTGTAGAGTACCATTCTTTGCCTGGATATTTAAGGGACAATGAGTTCATTGTGGGCCATTACCGTCCTGAATGGCC
ATTGAAGCAGGTGCTGCTCAGTGTCTTCACTATCCATAATGAGACATTGAATGTTTGGACGCATTTGATTGGGTTCTTCCTTTTCCTTTCCTTGACCATA
TACACTGCAATGAAGGTTCCAAAGGTTGTTGATCTTCATTCTCTCCATCTTCCAGAGGTGTTAAAAGCTGATTTGCACAGATTGCAAGAGTGCCTCCCCT
CTTTACCCACCATGCCTGATCTTCACAAACTTAGGGAGGAGTTGAAGAGTACATTTCCTTCAATTGATATGCTTCCATCACTCTCAGGATGGCATGTTAT
GGACCTCCTATACAATTGTTTGCCTGAGCGGTTCTCACATGGTAACCAGACTGATGTTTATGTTCTGCGGACCGTGAAGGAGGATGTTGCAAACATAATA
GCACCCCTAATGATGATGAGGCCAATCACACGATGGCCATTCTATGCTTTCTTGGGCGGGGCCATGTTTTGCTTGCTAGCTAGCAGCACGTGCCACCTTC
TCTCGTGCCACTCCAAGCGTTCATCATACATCCTGCTTAGGCTTGACTATGCCGGAATTGCAGCCCTTATTTCTACCTCCTTTTTCCCTCCGGTGTACTA
CTCCTTCATGTGCAATCCTTTTTTCTGTAACCTTTACATGGGGTTCATAACTGTCTTGGGAGTTTCCACAATAATGGTTTCGCTCCTGCCAGTGTTTCAA
AACCCTGAATTTCGTACCGTTCGTGCGTCCCTCTTCCTCGGCATGGGTTTGTCAGGGATAGCACCTATTCTGCACAAGCTTATCTTGTTCTGGCATCAAC
CTGAAGCCCTTCACACAACTGGCTATGAGGTTTTGATGGGGATTTTCTATGGACTCGGAGCACTGGTTTATGCCACCAGGATTCCGGAGAGATGGATGCC
TGGGAAATTCGACATTGCAGGGCACAGCCACCAGCTTTTCCATGTATTGGTGGTGGCTGGAGCTTATACTCATTACCATGCAGGGCTGGTTTACCTCAAG
TGGCGAGACCTGGAAGGATGCTGA
AA sequence
>Potri.007G005800.1 pacid=42766488 polypeptide=Potri.007G005800.1.p locus=Potri.007G005800 ID=Potri.007G005800.1.v4.1 annot-version=v4.1
MAGVNEMIEGSELITETIEKLPATVSREGKGKRLCNKAQYQLVEYHSLPGYLRDNEFIVGHYRPEWPLKQVLLSVFTIHNETLNVWTHLIGFFLFLSLTI
YTAMKVPKVVDLHSLHLPEVLKADLHRLQECLPSLPTMPDLHKLREELKSTFPSIDMLPSLSGWHVMDLLYNCLPERFSHGNQTDVYVLRTVKEDVANII
APLMMMRPITRWPFYAFLGGAMFCLLASSTCHLLSCHSKRSSYILLRLDYAGIAALISTSFFPPVYYSFMCNPFFCNLYMGFITVLGVSTIMVSLLPVFQ
NPEFRTVRASLFLGMGLSGIAPILHKLILFWHQPEALHTTGYEVLMGIFYGLGALVYATRIPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHAGLVYLK
WRDLEGC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37680 HHP4 heptahelical protein 4 (.1.2) Potri.007G005800
[exp]
0 1
AT2G38870 Serine protease inhibitor, pot... Potri.010G075800
[exp]
12.96 0.9665
AT3G09925 Pollen Ole e 1 allergen and ex... Potri.006G119100
[exp]
14.69 0.9647
Potri.003G012000
[exp]
14.89 0.9328
AT2G04100 MATE efflux family protein (.1... Potri.017G120500
[exp]
15.77 0.9665
Potri.005G176466
[exp]
17.14 0.8925
AT2G47180 ATGOLS1 galactinol synthase 1 (.1) Potri.002G191600
[exp]
21.67 0.9192 Pt-GOLS2.2
AT3G22930 CML11 calmodulin-like 11 (.1) Potri.002G047300
[exp]
24.67 0.9568 Pt-ACCAL.7
AT1G30870 Peroxidase superfamily protein... Potri.010G175100
[exp]
25.21 0.9572
AT5G44120 ATCRA1, CRU1, C... CRUCIFERINA, RmlC-like cupins ... Potri.005G224700
[exp]
30.88 0.9553 GY4.2
AT3G04500 RNA-binding (RRM/RBD/RNP motif... Potri.019G018900
[exp]
32.09 0.9156

Potri.007G005800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.