Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GT6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22900 593 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G37690 558 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT5G07720 313 / 2e-102 Galactosyl transferase GMA12/MNN10 family protein (.1) AT3G62720 305 / 4e-99 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT1G74380 304 / 5e-99 XXT5 xyloglucan xylosyltransferase 5 (.1) AT4G02500 297 / 3e-96 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT1G18690 297 / 1e-95 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G38310 187 / 5e-58 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G006100 [exp] 832 / 0 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.015G061800 [exp] 316 / 1e-103 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.012G068300 [exp] 309 / 8e-101 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.008G208000 [exp] 297 / 4e-96 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025300 [exp] 297 / 4e-96 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 293 / 6e-95 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011550 [exp] 691 / 0 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10019265 [exp] 670 / 0 AT2G22900 557 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10021631 [exp] 310 / 4e-101 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 309 / 1e-100 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10019076 [exp] 303 / 5e-99 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 303 / 8e-99 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10002870 [exp] 298 / 9e-97 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037519 [exp] 297 / 3e-96 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037516 [exp] 296 / 9e-96 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 262 / 2e-83 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF05637 [poplar] [flax] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Potri.007G005900.3 pacid=42766572 polypeptide=Potri.007G005900.3.p locus=Potri.007G005900 ID=Potri.007G005900.3.v4.1 annot-version=v4.1 ATGGTCACGCCAGAATTGTCTCAAAGCAAGTCTCAGTTCTCTCCAATGGCTAAATCAAGTGTCAGAACCAAACCCTCTTCCTGTTTCAGTGATGGGTCTC TCTATCTCGGTGCTGCTTTACTGGCTTTTTTACTAGTTTGGTCACTTTGGTCCTATGCACTTTCTCGCAATTTCGACCCCAAAACAAGTGCGAAATCTGT CGCCAACACCCATGCCCATGAATGCGTTCAAGAAAACCCTGAAGTCAGTTTACACTACGACCCACCAGACCAGACCTTCTATGACGATCAAGAACTGAGT TACTCTATCGAGAAACCGATCAAGAACTGGGACGAGAAGCGAAAGGAGTGGCTTAAACACCACCCTTCGTTTGCCCCAGGTGCTCGTGATCGTGTGGTTC TTGTGACTGGATCACAACCAAAACCATGTAAGAACCCAATAGGTGATCATTTACTCTTAAGGTTCTTTAAAAACAAAGTTGATTATTGTAGAATCCACGG TTATGATATCTTTTACAACAACGTTTTGTTACATCCAAAAATGCATAGTTACTGGGCCAAACTACCCGTCGTTAAAGCAGCCATGTTGGCTCACCCAGAA GCTGAGTGGATTTGGTGGGTTGACTCGGATGCTATGTTCACCGACATGGAGTACAAGCTTCCATTGCAACGTTACGATTACAAGAAACATAATCTGATCG TTCACGGGTGGGAAAAACTGATCTACGAGAAGAAGAGCTGGACTGCTTTAAACGCTGGCGTTTTTCTGATTAGAAACTGTCAGTGGTCCATGGATTTCAT GGAGAAATGGAGCGGCATGGGTCCTATGAGTTCAGAATATGAAAAATGGGGTGAGATCCAACGGTCAGTATTCAAGGACAAACTGTTCCCCGAGTCAGAC GACCAGTCGGGTTTGACATATTTGCTTTACAAAGATAAGAGTTTAACGGGGAAGATTTACTTAGAAGGGGAGTATTATTTTGAAGGTTATTGGGCAGATA TACTGCCAACGTACGATAACATAACGGAGAAGTACACGGAGTTAGAAAAGGAAGATGGGAAATTGAGGAGACGACATGCAGAGAAAGTGAGTGAGCAATA CGGTGTGTTTAGAGAGCCACACCTGAGAGAGGCAGGGAATGGAAAAGGCAGCTGGAGAAGACCGTTTATCACGCATTTTACTGGCTGCCAACCTTGTAGC GGGGACCACAATCAGATGTATGAAGGGGAGACTTGCTGGAATGGGATGGTCAAGGCTTTGAATTTTGCTGACAATCAAGTTCTGAGGAAATATGGTTTCG TGCACCCTGATTTACTGGATTCTAACACCGTCACCGAGACGTCGTTTGATTATCCTGATGACGGGCCCTGGTAA
AA sequence Show only first row Show all	>Potri.007G005900.3 pacid=42766572 polypeptide=Potri.007G005900.3.p locus=Potri.007G005900 ID=Potri.007G005900.3.v4.1 annot-version=v4.1 MVTPELSQSKSQFSPMAKSSVRTKPSSCFSDGSLYLGAALLAFLLVWSLWSYALSRNFDPKTSAKSVANTHAHECVQENPEVSLHYDPPDQTFYDDQELS YSIEKPIKNWDEKRKEWLKHHPSFAPGARDRVVLVTGSQPKPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNVLLHPKMHSYWAKLPVVKAAMLAHPE AEWIWWVDSDAMFTDMEYKLPLQRYDYKKHNLIVHGWEKLIYEKKSWTALNAGVFLIRNCQWSMDFMEKWSGMGPMSSEYEKWGEIQRSVFKDKLFPESD DQSGLTYLLYKDKSLTGKIYLEGEYYFEGYWADILPTYDNITEKYTELEKEDGKLRRRHAEKVSEQYGVFREPHLREAGNGKGSWRRPFITHFTGCQPCS GDHNQMYEGETCWNGMVKALNFADNQVLRKYGFVHPDLLDSNTVTETSFDYPDDGPW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22900			Galactosyl transferase GMA12/M...		Potri.007G005900 [exp]	0	1	Pt-GT6.1
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Potri.018G043900 [exp]	3.46	0.7965
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.004G038100 [exp]	4.58	0.7927
AT2G22900			Galactosyl transferase GMA12/M...		Potri.014G006100 [exp]	6.32	0.8193	GT6.2
AT1G11125			unknown protein		Potri.004G037100 [exp]	8.06	0.7117
AT5G45480			Protein of unknown function (D...		Potri.015G113700 [exp]	12.48	0.8150
AT1G80170			Pectin lyase-like superfamily ...		Potri.001G171900 [exp]	13.07	0.7560
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.017G009900 [exp]	13.85	0.7443
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Potri.004G183500 [exp]	16.58	0.7741
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.009G020400 [exp]	16.61	0.7232
AT1G78172			unknown protein		Potri.002G096200 [exp]	18.49	0.7854

Compare expression of checked genes

Potri.007G005900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.