Plant FIBer expression Database

Potri.007G006000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019268
[exp]
70 / 3e-14 AT5G67640 72 / 1e-14 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G006000.1 pacid=42766734 polypeptide=Potri.007G006000.1.p locus=Potri.007G006000 ID=Potri.007G006000.1.v4.1 annot-version=v4.1
ATGCGCGGTGAAGAGAAGCGACGCCAGCTCCATGAGGCCATTCTTAACACTCTTTATCCACAACTACATGAAACAGAAGATGGAAAAGGCCCTGTAAGCA
CAGCGAATGATGGGTTTGATGTTAGCCTGGTCCCAGATGATTATGGGCTGCGACAGAGTGGTTCATCGACAAGTGAGGAAGATGATGGTGATGATGAGGG
CAGATTAGAATCGGAGACCCTCAAGTTAACTAGAGCTCAAAGGAAGAGGCTACGTCGAAAGAAGCTCAAGGAGGATATTTCTCGTCGAGGAAAAATTATT
GGGCCGTTGCCTTTGTCAAGCAATGATGGAGAAGGTGGTTGTAGTAGTGCAGTTAAAGAACGCAGCCCAGCTGTTCGAGAAAATGCTGATGAGGATGATA
GTCATCTTAGTGCTGCTGCCAGTAACAACCCTGGAGGTGGTGCTAACCAGAGTAAGCTAAAGCAGAGGAGGATGGCTAAGAGGCTGGCAAGGGAAAGGTT
GAAGCCTTCCATTGTGGAGACTGATGTTCAGGGCCAAACTTTGAAGTCTACAACAGAGGAGACCGGTGACCAAGATCAGATAAGAACAACACTATGA
AA sequence
>Potri.007G006000.1 pacid=42766734 polypeptide=Potri.007G006000.1.p locus=Potri.007G006000 ID=Potri.007G006000.1.v4.1 annot-version=v4.1
MRGEEKRRQLHEAILNTLYPQLHETEDGKGPVSTANDGFDVSLVPDDYGLRQSGSSTSEEDDGDDEGRLESETLKLTRAQRKRLRRKKLKEDISRRGKII
GPLPLSSNDGEGGCSSAVKERSPAVRENADEDDSHLSAAASNNPGGGANQSKLKQRRMAKRLARERLKPSIVETDVQGQTLKSTTEETGDQDQIRTTL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G67640 unknown protein Potri.007G006000
[exp]
0 1
AT3G20480 AtLpxK lipid X K, tetraacyldisacchari... Potri.001G418800
[exp]
4.24 0.8224
AT1G49540 ELP2, AtELP2 Elongator subunit 2, elongator... Potri.010G119600
[exp]
8.12 0.7888
AT5G13230 Tetratricopeptide repeat (TPR)... Potri.001G062566
[exp]
8.12 0.8402
AT1G66920 Protein kinase superfamily pro... Potri.015G018000
[exp]
10.39 0.8191
AT5G37530 NAD(P)-binding Rossmann-fold s... Potri.004G083200
[exp]
10.95 0.7951
AT2G39100 RING/U-box superfamily protein... Potri.008G215200
[exp]
14.07 0.7975
AT3G26430 GDSL-like Lipase/Acylhydrolase... Potri.001G074400
[exp]
19.62 0.8047 ENOD8.2
AT3G20550 FHA DDL DAWDLE, SMAD/FHA domain-contai... Potri.001G420400
[exp]
20.78 0.7627
AT5G25150 TAF5 TBP-associated factor 5 (.1) Potri.018G020200
[exp]
21.16 0.7968
AT5G51030 NAD(P)-binding Rossmann-fold s... Potri.012G110200
[exp]
24.85 0.6996

Potri.007G006000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.