Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58420 68 / 2e-14 Uncharacterised conserved protein UCP031279 (.1) AT4G37700 57 / 1e-10 unknown protein AT1G10140 56 / 5e-10 Uncharacterised conserved protein UCP031279 (.1) AT5G65925 45 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G006300 [exp] 205 / 1e-68 AT1G58420 56 / 3e-10 Uncharacterised conserved protein UCP031279 (.1) Potri.014G014600 [exp] 92 / 8e-24 AT1G58420 87 / 4e-22 Uncharacterised conserved protein UCP031279 (.1) Potri.002G117100 [exp] 89 / 8e-23 AT1G58420 84 / 1e-20 Uncharacterised conserved protein UCP031279 (.1) Potri.014G014500 [exp] 74 / 4e-17 AT1G58420 81 / 9e-20 Uncharacterised conserved protein UCP031279 (.1) Potri.009G086000 [exp] 62 / 2e-12 ND / Potri.001G290400 [exp] 54 / 2e-09 ND / Potri.009G085900 [exp] 51 / 3e-08 ND / Potri.001G290300 [exp] 48 / 3e-07 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025207 [exp] 73 / 2e-16 AT4G37700 56 / 4e-10 unknown protein Lus10011553 [exp] 69 / 2e-15 ND 49 / 4e-08 Lus10018665 [exp] 58 / 1e-10 AT1G10140 89 / 2e-22 Uncharacterised conserved protein UCP031279 (.1) Lus10011707 [exp] 53 / 4e-09 AT4G37700 45 / 2e-06 unknown protein Lus10007729 [exp] 53 / 9e-09 AT1G10140 82 / 1e-19 Uncharacterised conserved protein UCP031279 (.1) Lus10012496 [exp] 50 / 9e-08 AT1G58420 86 / 4e-21 Uncharacterised conserved protein UCP031279 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G006100.1 pacid=42766275 polypeptide=Potri.007G006100.1.p locus=Potri.007G006100 ID=Potri.007G006100.1.v4.1 annot-version=v4.1 ATGGCTACCAGTAAGAAGCCTAGCAAAGAGAGCAAACTGAAAAGGATTCTGAAGGTGCCCCTCAAGATTTTGACCAGCGCCAGGGACTTCTACATGAAAG GCATGACTGAATACTCAGACCAGGTTTATGTGATGAGTAACCCTACAGGAAATCTTAATAACATGCCTCGCAGTTACAGTGTCAGCTCCTCAAAATCAAA CCACTTCGATGATGATTACAGGGAGCTTATAAGGGCTGCATCCACAAGGAGTACTTTAGGACGTAGCAACAACATGGATGTTCGTGCAAGACAGCAATAT ATTACTCGTGATAAAAAATCTGCAGCTGAAGTAGCAGACAATATGTCTAGGAGTCGTAGCGTTGCTATTGGAAGGATCGACGAAGAAACATCGACATGCG ACTTTGATGAAGATCAGGATGTCAAGGCTAAGACTGGTCATGTTTATCCCAGAAGCAGAAGCTATGCTGTTTCTAAAAGAACTCCTACTAGGGCGTTTTA A
AA sequence Show only first row Show all	>Potri.007G006100.1 pacid=42766275 polypeptide=Potri.007G006100.1.p locus=Potri.007G006100 ID=Potri.007G006100.1.v4.1 annot-version=v4.1 MATSKKPSKESKLKRILKVPLKILTSARDFYMKGMTEYSDQVYVMSNPTGNLNNMPRSYSVSSSKSNHFDDDYRELIRAASTRSTLGRSNNMDVRARQQY ITRDKKSAAEVADNMSRSRSVAIGRIDEETSTCDFDEDQDVKAKTGHVYPRSRSYAVSKRTPTRAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58420			Uncharacterised conserved prot...		Potri.007G006100 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G273001 [exp]	2.64	0.9021
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Potri.001G352400 [exp]	2.82	0.8839
AT5G38210			Protein kinase family protein ...		Potri.017G118100 [exp]	5.09	0.8870
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.012G001400 [exp]	5.29	0.8677	NAC015
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	6.48	0.8868
AT5G13330	AP2_ERF	RAP2.6L	related to AP2 6l (.1)		Potri.003G162500 [exp]	10.95	0.8734
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G008500 [exp]	11.83	0.8760	Pt-WRKY11.1
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.005G220700 [exp]	12.00	0.8675	Pt-CYP94.7
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G179900 [exp]	12.32	0.8418
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.014G025000 [exp]	12.36	0.8622

Compare expression of checked genes

Potri.007G006100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.