Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22870 434 / 2e-154 EMB2001 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G11480 280 / 1e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G58370 105 / 2e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G08410 42 / 0.0004 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27200 42 / 0.0004 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G243200 [exp] 300 / 1e-101 AT5G11480 422 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G037000 [exp] 290 / 9e-98 AT5G11480 421 / 7e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G006501 [exp] 218 / 2e-72 AT2G22870 199 / 2e-65 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G007450 [exp] 137 / 3e-41 AT2G22870 131 / 3e-39 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G128000 [exp] 92 / 2e-20 AT5G58370 461 / 1e-158 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G021900 [exp] 41 / 0.0006 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039653 [exp] 451 / 3e-161 AT2G22870 426 / 2e-151 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011703 [exp] 447 / 6e-160 AT2G22870 427 / 5e-152 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022126 [exp] 291 / 7e-98 AT5G11480 418 / 8e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011673 [exp] 287 / 1e-96 AT5G11480 418 / 1e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009919 [exp] 98 / 1e-22 AT5G58370 473 / 9e-165 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021017 [exp] 42 / 0.0005 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10023835 [exp] 42 / 0.0005 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10004103 [exp] 42 / 0.0006 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013359 [exp] 42 / 0.0007 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Potri.007G006300.1 pacid=42766791 polypeptide=Potri.007G006300.1.p locus=Potri.007G006300 ID=Potri.007G006300.1.v4.1 annot-version=v4.1 ATGCTACTACTTCGAAACCGCCTCTTCACTCTCTCATCGCTTCCCTCTCTAACTCAACACGCCAAAAACCATTTTCCGTTAACCTTCTCTTTCAATTACT CGACCCGAGAACCTCCTAACCGAAACCCTTCCGGCCATGTCTCTGCTTCAAAGACATCGAAACCACCTCCACTCTCTGACGTGGCCCGGTTTGTCCGTAC AGTTCTCTTTGTGCCACCCGGAGTTGACCCGGATAAAGTGACGGAGGAGATTATTTTGCCCGGCTCGAATATCGTTGTTGGACCTTATGCGGGTCATTCT CAGATTAAGGAAGTTGAGTTTGTAAAAAGCAGTGGAAGGGCCAAGGATTGTCCGAGAGATGATCGACCTGAGTTTGCAATTTTGGGTCGGTCCAATGTGG GAAAGTCTTCACTTATTAATGTTCTTGCTAGGAAGAAAGAAGTTGCTCTCACTTCGAAAAAACCAGGGAAGACCCAGTTGATAAATCATTTCTTGGTGAA TAAAAGTTGGTACCTTGTGGATTTGCCTGGTTATGGGTTTGCTAAAGCCCCAGATTCTGCTCGAATGGATTGGTCGTCGTTTACAAAAGGCTACTTTTTA AACAGAGAAACTCTGGTAGCTGTCCTACTTCTCATTGATGCTAGCGTCCCTCCTCAAAAGATTGACCTGGATTGTGCTAATTGGCTTGGACGCAACAATA TACCAATGACATTAGTTTTCACTAAGTGTGACAAAATGAAGGGGGGAAAGAGAACAAGGCCTGATGAGAATATCAAGAATTTTCAAGAGTTAATGAGGCA AAACTATCGGGAACATCCTGCATGGATCATGACTAGTAGTGTCACTGGTTTGGGCAGAGATGAGCTTCTCCTACACATGTCCCAGCTAAGAAACTACTGG GATCAATAA
AA sequence Show only first row Show all	>Potri.007G006300.1 pacid=42766791 polypeptide=Potri.007G006300.1.p locus=Potri.007G006300 ID=Potri.007G006300.1.v4.1 annot-version=v4.1 MLLLRNRLFTLSSLPSLTQHAKNHFPLTFSFNYSTREPPNRNPSGHVSASKTSKPPPLSDVARFVRTVLFVPPGVDPDKVTEEIILPGSNIVVGPYAGHS QIKEVEFVKSSGRAKDCPRDDRPEFAILGRSNVGKSSLINVLARKKEVALTSKKPGKTQLINHFLVNKSWYLVDLPGYGFAKAPDSARMDWSSFTKGYFL NRETLVAVLLLIDASVPPQKIDLDCANWLGRNNIPMTLVFTKCDKMKGGKRTRPDENIKNFQELMRQNYREHPAWIMTSSVTGLGRDELLLHMSQLRNYW DQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Potri.007G006300 [exp]	0	1
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Potri.015G079700 [exp]	5.65	0.9340
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Potri.005G224000 [exp]	7.21	0.9196
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Potri.015G076200 [exp]	10.00	0.8816	DXR.2
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Potri.006G110100 [exp]	17.34	0.8956
AT1G31830			Amino acid permease family pro...		Potri.003G103600 [exp]	18.02	0.8871
AT3G54826			Zim17-type zinc finger protein...		Potri.008G037300 [exp]	19.07	0.9019
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.008G012500 [exp]	21.30	0.9303	NAP7.2
AT3G28460			methyltransferases (.1)		Potri.001G349800 [exp]	22.97	0.9213
AT3G05675			BTB/POZ domain-containing prot...		Potri.001G086100 [exp]	25.86	0.8653
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Potri.010G075900 [exp]	31.30	0.8637

Compare expression of checked genes

Potri.007G006300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.