Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49800 289 / 6e-94 BSD domain-containing protein (.1) AT5G65910 269 / 3e-86 BSD domain-containing protein (.1) AT1G10720 163 / 8e-46 BSD domain-containing protein (.1) AT2G10950 108 / 3e-26 BSD domain-containing protein (.1) AT3G24820 54 / 2e-08 BSD domain-containing protein (.1) AT1G26300 54 / 1e-07 BSD domain-containing protein (.1.2) AT1G69030 52 / 4e-07 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G008400 [exp] 518 / 0 AT3G49800 332 / 1e-109 BSD domain-containing protein (.1) Potri.014G014200 [exp] 216 / 1e-65 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1) Potri.018G125400 [exp] 141 / 5e-38 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1) Potri.T125207 [exp] 141 / 5e-38 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1) Potri.006G065200 [exp] 133 / 4e-35 AT2G10950 193 / 1e-58 BSD domain-containing protein (.1) Potri.010G137900 [exp] 58 / 3e-09 AT1G26300 241 / 2e-78 BSD domain-containing protein (.1.2) Potri.008G111900 [exp] 52 / 3e-07 AT1G69030 281 / 6e-94 BSD domain-containing protein (.1) Potri.002G242200 [exp] 47 / 4e-06 AT3G24820 167 / 4e-53 BSD domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011556 [exp] 337 / 1e-112 AT3G49800 372 / 3e-126 BSD domain-containing protein (.1) Lus10019271 [exp] 333 / 4e-111 AT3G49800 370 / 3e-125 BSD domain-containing protein (.1) Lus10027706 [exp] 114 / 1e-28 AT2G10950 147 / 9e-42 BSD domain-containing protein (.1) Lus10039982 [exp] 115 / 3e-28 AT2G10950 156 / 2e-44 BSD domain-containing protein (.1) Lus10036831 [exp] 48 / 9e-06 AT1G26300 305 / 2e-103 BSD domain-containing protein (.1.2) Lus10038170 [exp] 46 / 1e-05 AT3G24820 162 / 3e-51 BSD domain-containing protein (.1) Lus10019194 [exp] 47 / 2e-05 AT1G26300 294 / 8e-99 BSD domain-containing protein (.1.2) Lus10025929 [exp] 45 / 3e-05 AT3G24820 161 / 2e-50 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [poplar] [flax] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Potri.007G006400.4 pacid=42765364 polypeptide=Potri.007G006400.4.p locus=Potri.007G006400 ID=Potri.007G006400.4.v4.1 annot-version=v4.1 ATGGCATGGCTAGCAAGGTCTATAGCTAACTCTCTAAATTTCGACGATGAAGAAGAAGATTTCTCCAATACAGAATCGGATGAACAACAACGACAATCCA CGACACCTCGTGGCCTCAAAGAAGACTTGACAGATCTTAAACAAACCCTATCCCGCCAATTCTGGGGTGTCGCTTCTTTCCTCGCTCCTACACCGTCGGA GAATGATCCTCATCCAGATGACGAAGACGCTGCATTGATCGCCGGCATTCGCAGTGATTTTTCCGAAATTGGAGGCAAGTTTAAGTCAGGGATCTCCAAG CTTTCCACTAACAAAACGGTGTCGGAGTTCACAAAGATCGCCTCCGATTTGCTCCAGTTGGGATCCGAGAGTGACGATGATGAGATTGCGACAATTGTGG CAACTGCTGTGGGTGTGACTGAAGAAGTTGTGGGTTTTGCTAGAGATGTCGCTATGCATCCTGAGACTTGGCTCGACTTTCCCATTCCTCGTGTTCAAGA TTTTGAAGATTTTGATATGTCGGATGCCCAACAAGAACATGCTTTAGCTGTCGAGCGTCTTGCTCCCAGATTAGCTGCTTTAAGGATTGAGCTTTGTCCT GGATATATGAGTGAGGGCTGCTTTTGGAAGATTTACTTTGTTCTCTTGCACCCTAGACTCACTAAACATGATGCTCAGCTACTCTCAACTCCCCAAATAG TGGAAGCGAGAGCAATGTTGTCTCACGAGTTGCAAAACAAAGATAAGGCAAAGTCCACTCCAGATTGGCCTGGAGTTGGCACTCCCAGTGTAAAAGATAA TAGTAATACTGATTTACCACACGAAGAGACTTTGTCTGTGCCATCTCATGCTGAGACTGAATCAGTTACAATCATGACATCTGGCACTAAAGCAGCCCCT CCCACACTTGCAGCCAAGACACCTGATCATGAAACGGTCCCTTCCAATGTTTCAGCTGAACCAGAAATGGAGAAGCATCCAGTTGAAAGTACTCAGATGC AAATTATTGACAAATACATAGTCGAGGAAGAAAAGGTTAACCAGGCCAAACATCAACATTCATCGTCCAGTTCCTCTAGGATTCTGGATGAGAAATTTGA GGATGATGGTGATGATTGGTTGAAAGATGATAGTTCAGAAATGATTGGTGCCAGTGGAGCCTCAATGCCTCTTGGAAATGATGAGGATGTTTCATTCAGT GATCTTGAAGAGGATGATGAAGATGAACCTACAAGTTACACGAAAGTGGCATGA
AA sequence Show only first row Show all	>Potri.007G006400.4 pacid=42765364 polypeptide=Potri.007G006400.4.p locus=Potri.007G006400 ID=Potri.007G006400.4.v4.1 annot-version=v4.1 MAWLARSIANSLNFDDEEEDFSNTESDEQQRQSTTPRGLKEDLTDLKQTLSRQFWGVASFLAPTPSENDPHPDDEDAALIAGIRSDFSEIGGKFKSGISK LSTNKTVSEFTKIASDLLQLGSESDDDEIATIVATAVGVTEEVVGFARDVAMHPETWLDFPIPRVQDFEDFDMSDAQQEHALAVERLAPRLAALRIELCP GYMSEGCFWKIYFVLLHPRLTKHDAQLLSTPQIVEARAMLSHELQNKDKAKSTPDWPGVGTPSVKDNSNTDLPHEETLSVPSHAETESVTIMTSGTKAAP PTLAAKTPDHETVPSNVSAEPEMEKHPVESTQMQIIDKYIVEEEKVNQAKHQHSSSSSSRILDEKFEDDGDDWLKDDSSEMIGASGASMPLGNDEDVSFS DLEEDDEDEPTSYTKVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49800			BSD domain-containing protein ...		Potri.007G006400 [exp]	0	1
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.014G001000 [exp]	1.73	0.8005
AT1G21760		ATFBP7	F-box protein 7 (.1)		Potri.002G082500 [exp]	4.47	0.7982
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.010G180600 [exp]	6.00	0.7632
AT1G44770			unknown protein		Potri.005G176500 [exp]	6.00	0.7994
AT2G38550			Transmembrane proteins 14C (.1...		Potri.006G108700 [exp]	10.19	0.7691
AT5G24870			RING/U-box superfamily protein...		Potri.018G005600 [exp]	18.89	0.7430
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.002G160700 [exp]	21.63	0.7465
					Potri.015G107925 [exp]	23.64	0.7191
AT4G28690			unknown protein		Potri.002G255400 [exp]	25.21	0.7141
AT1G06050			Protein of unknown function (D...		Potri.017G027700 [exp]	25.29	0.6992

Compare expression of checked genes

Potri.007G006400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.