Plant FIBer expression Database

Potri.007G006600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10150 356 / 4e-120 ATPP2-A10 Carbohydrate-binding protein (.1)
AT1G59510 298 / 4e-98 CF9 Carbohydrate-binding protein (.1)
AT3G49790 276 / 8e-90 Carbohydrate-binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G006800
[exp]
609 / 0 AT1G10150 350 / 5e-118 Carbohydrate-binding protein (.1)
Potri.002G116400
[exp]
414 / 7e-143 AT1G10150 387 / 1e-132 Carbohydrate-binding protein (.1)
Potri.014G014100
[exp]
386 / 5e-132 AT1G10150 401 / 3e-138 Carbohydrate-binding protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003785
[exp]
368 / 4e-125 AT1G10150 447 / 1e-156 Carbohydrate-binding protein (.1)
Lus10007727
[exp]
363 / 3e-123 AT1G10150 429 / 1e-149 Carbohydrate-binding protein (.1)
Lus10012487
[exp]
358 / 2e-121 AT1G10150 439 / 2e-153 Carbohydrate-binding protein (.1)
Lus10011718
[exp]
293 / 7e-96 AT1G10150 288 / 2e-94 Carbohydrate-binding protein (.1)
Lus10039651
[exp]
283 / 3e-92 AT1G10150 298 / 2e-98 Carbohydrate-binding protein (.1)
Lus10018663
[exp]
278 / 3e-91 AT1G10150 342 / 2e-116 Carbohydrate-binding protein (.1)
PFAM info
Representative CDS sequence
>Potri.007G006600.1 pacid=42765104 polypeptide=Potri.007G006600.1.p locus=Potri.007G006600 ID=Potri.007G006600.1.v4.1 annot-version=v4.1
ATGGACTTGCAGTTGGTGAAAAAGGGTCTTCTTGATTATACCAGAAGAAAGAAGAGGTGGGCTCTTTTACTAGCAGCTCTTGGTTTCTCTACTTATACTG
CCTATAAAGTTTATCACTTTCCTTTACTAGCTGAAAAAAGAAAGAGAGTTTCCAAGATTTTTGGAGCTTTTGTTGCTGTTGCTGAAGTTATCTCTGATTC
TGCTGAAACTATTGGGGTTGTTTCTAAGGATTTTAAAGATTTTGTTCAATCCGAATCAGACCAAATTCCCAATAGTTTCAAGCAAATTTCTAAAGTGGCA
AGGTCAAATGAGTTCTCGGATGCACTAGTTACCCTTACACAAGCTTTAACTGTGGGAATTTTGCGTGGTTACCAAGCCAATGCAAGAAGAATTGATAATG
AAGCTGGTGCCAATGGGAATGGGAATGAAAGTCCAAGTTTTTTGGATAAGGTTTTTGATAAGCTTTGTTCTCCAGCTGGGTCTGGTTTTGTCTCTGTTGT
TGTTGGAAGCTTTGCTAGGAACTTGGTTTTGGGATTTTGTGAAGGTGGTCTGAATTCAAATTCAGATTTGAATGCTTCCGCTACTGGTACTGATGGTCAT
GATTCTGCTCGAAAATTGGTGGATGTGGTTTGTGGTGATAAGTCTAAAGAGCTGATTGGTGATTGTATTCAGTTATTTGTGAGCACAGCCGTTGCGGTTT
ACCTTGACAAAACTATGCATATCAACACCTATGATGAATTTTTTGCAGGATTAACCAATCCTAAGCACGAAACCAAGGTGAGAGGGGTGTTGGTATCAGT
ATGTAATGGTGCAATTGAGACTCTTGTCAAGACATCTCATCAAGTCTTGACAACTGATGATTCTAACACGAATTCGAGTTTCGATTCCCCTTATTCGGCT
GTTGATCAAGGAGAAAGTGCAATGGAGGATGAGCTCTCTGGAAAAGAAGCGTTTTTTAGTGAACCTAAAGCAAGAAAATCATTTGACGAGGTTAAGGAGA
ATGGGTGGGTTAATAAAGTGTCATCTACATTGGCAGTCCCAAGCAACAGGAGGCTTGTTCTCGATGTGACTGGGAGGGTTACGTTCGAGACTGTCCGGTC
TTTCCTGGAGTTTCTGCTGGGGAATCTGTATAATGGAATAAGGAGATGTGTTGATGTTTTTCATGAAGTTGTTGTTGATAGTGGTCTTGAAGTAGTGAGA
TATGTCAATGCAAAATCCTCTGTTATAGCAACTGTATGCATTTCTATGTGCTTGCACATATTAGATGGTGATTGGATTCTGGTTCCAGCTTAA
AA sequence
>Potri.007G006600.1 pacid=42765104 polypeptide=Potri.007G006600.1.p locus=Potri.007G006600 ID=Potri.007G006600.1.v4.1 annot-version=v4.1
MDLQLVKKGLLDYTRRKKRWALLLAALGFSTYTAYKVYHFPLLAEKRKRVSKIFGAFVAVAEVISDSAETIGVVSKDFKDFVQSESDQIPNSFKQISKVA
RSNEFSDALVTLTQALTVGILRGYQANARRIDNEAGANGNGNESPSFLDKVFDKLCSPAGSGFVSVVVGSFARNLVLGFCEGGLNSNSDLNASATGTDGH
DSARKLVDVVCGDKSKELIGDCIQLFVSTAVAVYLDKTMHINTYDEFFAGLTNPKHETKVRGVLVSVCNGAIETLVKTSHQVLTTDDSNTNSSFDSPYSA
VDQGESAMEDELSGKEAFFSEPKARKSFDEVKENGWVNKVSSTLAVPSNRRLVLDVTGRVTFETVRSFLEFLLGNLYNGIRRCVDVFHEVVVDSGLEVVR
YVNAKSSVIATVCISMCLHILDGDWILVPA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G10150 ATPP2-A10 Carbohydrate-binding protein (... Potri.007G006600
[exp]
0 1
AT3G20270 lipid-binding serum glycoprote... Potri.008G004500
[exp]
20.00 0.8313
AT5G59400 unknown protein Potri.009G032300
[exp]
20.83 0.7918
Potri.018G012401
[exp]
28.82 0.8333
AT5G61670 unknown protein Potri.012G114200
[exp]
41.10 0.8238
AT2G15695 Protein of unknown function DU... Potri.004G142000
[exp]
52.84 0.8099
AT3G02830 C3HZnF ZFN1 zinc finger protein 1 (.1) Potri.019G053200
[exp]
66.48 0.7886 ZFN3.2
AT2G41250 Haloacid dehalogenase-like hyd... Potri.016G037600
[exp]
67.88 0.7620
AT3G52950 CBS / octicosapeptide/Phox/Bem... Potri.007G098400
[exp]
86.90 0.7850
AT2G24395 chaperone protein dnaJ-related... Potri.006G278250
[exp]
125.88 0.7935
AT5G54630 C2H2ZnF zinc finger protein-related (.... Potri.011G131300
[exp]
182.74 0.7720

Potri.007G006600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.