Plant FIBer expression Database

Potri.007G006700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65880 34 / 0.0006 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G006850
[exp]
36 / 8e-05 AT5G65880 49 / 7e-10 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039652
[exp]
34 / 0.0006 AT5G65880 52 / 3e-11 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G006700.1 pacid=42765143 polypeptide=Potri.007G006700.1.p locus=Potri.007G006700 ID=Potri.007G006700.1.v4.1 annot-version=v4.1
ATGTTCTTTAGAAGCAGGTTTCTCTCCTTTCCCCTGGTGATTGGAGCTGTTATCATTGGAGTCGTTTCAGGGAAGGCAATATTTGGACCCCCACTTGATG
AGTACTGGAAAAAGAAGCTTGATGAAGAGGCAGCAGCAAAAGAGACTGACACAAGCTCCACCTAG
AA sequence
>Potri.007G006700.1 pacid=42765143 polypeptide=Potri.007G006700.1.p locus=Potri.007G006700 ID=Potri.007G006700.1.v4.1 annot-version=v4.1
MFFRSRFLSFPLVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKETDTSST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65880 unknown protein Potri.007G006700
[exp]
0 1
AT3G08710 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredo... Potri.006G110100
[exp]
4.00 0.8785
AT3G17210 ATHS1 A. THALIANA HEAT STABLE PROTEI... Potri.010G151000
[exp]
8.60 0.8601
AT3G47620 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea ... Potri.004G046300
[exp]
10.81 0.8390
AT3G46020 RNA-binding (RRM/RBD/RNP motif... Potri.001G236200
[exp]
12.48 0.8251
AT1G19240 unknown protein Potri.006G137401
[exp]
17.14 0.8161
AT2G27490 ATCOAE dephospho-CoA kinase family (.... Potri.010G206900
[exp]
17.66 0.8000
AT3G58830 haloacid dehalogenase (HAD) su... Potri.005G201100
[exp]
18.49 0.7928
Potri.008G005500
[exp]
27.20 0.8317
AT1G22160 Protein of unknown function (D... Potri.005G168900
[exp]
29.08 0.8424
AT3G54826 Zim17-type zinc finger protein... Potri.008G037300
[exp]
29.91 0.8425

Potri.007G006700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.